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Terpene synthases from Cannabis sativa - PMC
Cannabis (Cannabis sativa) plants produce and accumulate a terpene-rich resin in glandular trichomes, which are abundant on the surface of the female inflorescence. Bouquets of different monoterpenes and sesquiterpenes are important components of ...
www.ncbi.nlm.nih.gov
Published online 2017 Mar 29. doi: 10.1371/journal.pone.0173911
PMCID: PMC5371325
PMID: 28355238
Terpene synthases from Cannabis sativa
Knowledge of the CsTPS gene family may offer opportunities for selection and improvement of terpene profiles of interest in different cannabis strains and varieties.
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Front Plant Sci. 2023; 14: 1154332.
Published online 2023 Jun 8. doi: 10.3389/fpls.2023.1154332
PMCID: PMC10285108
PMID: 37360738
* ‡ and Henrik Brinch-Pedersen ‡
Author information Article notes Copyright and License information PMC Disclaimer
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Keywords: Cannabis sativa, medical Cannabis, drug type Cannabis, genome editing, plant regeneration, transformation
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Cannabis produces a range of secondary metabolites, the best known are the phytocannabinoids. Although as many as 120 different cannabinoids have been reported (see Radwan et al. (2017) for review), the most abundant cannabinoids are THC, CBD, cannabigerol (CBG) and cannabinol (CBN) (Flores-Sanchez and Verpoorte, 2008; Fischedick et al., 2010; ElSohly et al., 2016). Tetrahydrocannabinolic acid (THCA) and cannabidiolic acid (CBDA) are made from the common precursor, cannabigerolic acid (CBGA) whereas CBN is an oxidation product of THC. Acidic forms of cannabinoids are biosynthesized in the trichomes on the female flowers (Sirikantaramas et al., 2005; Livingston et al., 2020). The storage of the toxic cannabinoids in trichomes minimizes the risk of self-intoxication (Sirikantaramas et al., 2005). The acidic forms are spontaneously decarboxylated into THC and CBD by heat and light. THC is the main psychoactive compound in drug type Cannabis (Pertwee, 1988), but also beneficial effects are reported (Grotenhermen, 2003). Moreover, other cannabinoids, especially CBD, have attracted interest for their pharmacological properties. CBD has been reported to act as an antidepressant, to relieve pain and anxiety and to reduce inflammation. It is believed to have beneficial effects in a variety of diseases, such as Alzheimer’s and Parkinson’s diseases, multiple sclerosis, Huntington’s disease, epilepsy, and cancer (Pisanti et al., 2017). The resin from the glandular trichomes also contain terpenes (Flores-Sanchez and Verpoorte, 2008). Terpenes does not only add flavor to the product but also have medical properties, not least in synergic action (entourage effect) with cannabinoids (Ferber et al., 2020).
In planta, the secondary metabolites are believed to protect the plants against various pathogens and insects. Both cannabinoids and terpenes have been shown to possess antifungal activity (McPartland, 1984; Wanas et al., 2016) and to be toxic to insects (Taura et al., 2007; Mithöfer and Boland, 2012; Bedini et al., 2016). Although the active component is not known, Cannabis resin might have antibacterial activity (Radošević et al., 1962) and extract of Cannabis leaves is active against nematodes (Mukhtar et al., 2013).
Solving the many challenges in Cannabis sativa calls for the use of all available tools. In the current review, we discuss the challenges and possibilities for New Breeding Techniques, such as genome editing in medical Cannabis. To set the scene, we first present a brief status of Cannabis breeding and the level of genetic diversity. We then address the requirements for successful tissue culture and transformation with a focus on the status of micro propagation, regeneration and transient as well as stable transformation. Finally, we discuss the many opportunities for using genome editing in the improvement of medical Cannabis.
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The level and composition of cannabinoids and terpenoids as well as stability in production, flowering time and lower resource input are in focus in modern medical Cannabis breeding, with more focus on CBD and other non-psychoactive cannabinoids. Resistance against insects, pathogens and viruses is also in high demand. Healthy mother plants are essential. However, maintenance of mother plants in contained humid environments poses a challenge in relation to attacks by plant pathogens such as powdery mildew. This significant challenge can only be kept at tolerable levels by a strict growth control including air circulation, ventilation, and moisture control as the strict regulations for medical products do not permit any use of pesticides.
In Cannabis, the effect of polyploidization has been studied in hemp as well as drug-type Cannabis (Bagheri and Mansouri, 2015; Mansouri and Bagheri, 2017; Parsons et al., 2019; Hesami et al., 2021a). In both types, the tetraploid plants had broader leaves with bigger and less dense stomata, both clear signs of polyploidization. Cuttings of the drug-type Cannabis had reduced rooting ability, a phenomenon also observed in hop (Trojak-Goluch and Skomra, 2013; Parsons et al., 2019). When the level of cannabinoids was analyzed, only small changes were found. Levels of CBD was increased by 9%, whereas the level of THC was unchanged in drug-type Cannabis (Parsons et al., 2019). In the hemp-type plants, the level of THC was reduced in the female flowers with no change in the amount of CBD (Bagheri and Mansouri, 2015).
The terpene profile was not analyzed in the hemp-type Cannabis, but in the drug-type, the terpene profile changed after polyploidization, as mainly the contents of sesquiterpenes increased (Parsons et al., 2019). A change in terpene profile after polyploidization was also found in hop. Although the general level was lower, there was an increase in terpenes desirable for the brewing industry (Trojak-Goluch and Skomra, 2013).
These experiments did not show very promising results as far as an increase in cannabinoid is concerned. It should be reminded, however, that only one genotype per experiment gave tetraploid plants that could be analyzed. As there is often a difference between genotypes, the effect of polyploidization on the level of cannabinoids, terpenes and other important traits might have a different and more positive outcome in other trials, not least after crossing of polyploids with different genetic backgrounds.
Genetic markers such as single sequence repeats (SSRs) and Inter Simple Sequence Repeats (ISSR) have shown a high degree of genetic diversity in drug type Cannabis (Punja et al., 2017; Soler et al., 2017; de Oliveira Pereira Ribeiro et al., 2020). The analyses not only showed diversity between but also within cultivars (Punja et al., 2017; Soler et al., 2017). The high diversity within a cultivar means that hardly any reduction in the genetic variation was found after one round of selfing (Punja and Holmes, 2020). Some of this high variation found after selfing might be due to accumulation of somatic mutations within plants been propagated as cuttings for a long time (Adamek et al., 2022).
The high genetic diversity found in Cannabis is very useful for breeding new varieties. For medical Cannabis, however, homogenous material is needed, and varieties must be multiplied via cuttings. Introduction of single gene traits like disease resistance genes in Cannabis by traditional cross breeding, without affecting the genetic background and thereby the cannabinoid and terpene profile is difficult. Genome editing might solve this issue, see below.
The simplest form of markers is based on the genes for tetrahydrocannabinolic acid synthase (THCAS) and cannabidiolic acid synthase (CBDAS). As DNA extracted from the seized material is analyzed, there is no need to wait for plants to grow in case of seed material or to extract cannabinoids to analyze for the level of THC and CBD. The markers reported by Kojoma et al. (2006) and Rotherham and Harbison (2011) was based on THCAS, only. At the time, it was believed that the two enzymes belonged to the same locus so that plants having the THCA synthase would contain only THC or a mix of THC and CBD. Other markers are based on both THCAS and CBDAS sequences (Weiblen et al., 2015; Welling et al., 2016; Cascini et al., 2019; Toth et al., 2020), which is in line with newer information showing that the two enzymes are found in two closely linked loci (Laverty et al., 2019).
Other types of markers have also been shown to be useful; autosomal microsatellite markers and markers based on mitochondrial and chloroplast DNA. SSR’s have been used to differentiate between samples (Soler et al., 2016; Dufresnes et al., 2017; Houston et al., 2017; Soler et al., 2017; Houston et al., 2018; de Oliveira Pereira Ribeiro et al., 2020; Ioannidis et al., 2022b). It seems that a limited number of markers, from 6 to 13, is enough, not only to sort Cannabis from hop, but to individualize and differentiate between types (drug versus hemp) and to say something about geographic origin (Houston et al., 2017; de Oliveira Pereira Ribeiro et al., 2020). Often markers can be multiplexed (Dufresnes et al., 2017; Houston et al., 2017; de Oliveira Pereira Ribeiro et al., 2020), reducing labor and cost.
Thus, genetic markers are useful as forensic tool to give a confirmation whether a sample is Cannabis and to discriminate between hemp and drug type samples. This can otherwise be difficult, especially with seed samples where there is no obvious difference. Also, information about the geographical origin of samples can give valuable information about distribution routes of illegal products.
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A common feature for ZFNs, TALENs and CRISPR/Cas is the programmability to cleave in specific locations and generate DNA double strand breaks (DSBs) that stimulate standard cellular repair mechanisms including non-homologous end joining (NHJE) and homology-directed repair (HDR) (Voytas, 2013; Gupta et al., 2019). By NHEJ, the repair at the DSB site is often imprecise which leads to introduction of small deletions/insertions at the site of break, resulting in knockout of gene function via frame shift mutations. HDR requires a homologous DNA segment as template to correct or replace existing sequence. By HDR it is thus possible to make specific nucleotide changes.
ZNF´s and TALENs are hybrid proteins created by fusing ZF and TALE DNA-binding domain to the non-specific cleavage domain of FokI endonuclease (Petolino, 2015; Khan et al., 2017). The FokI endonuclease non-specific cleavage domain must dimerize to cleave the DNA target. In August 2013, CRISPR/Cas emerged as an alternative genome editing method in plants (Feng et al., 2013; Li et al., 2013; Nekrasov et al., 2013; Shan et al., 2013; Xie and Yang, 2013). The CRISPR method was originally discovered as an antiviral defense system widespread in prokaryotes (Wiedenheft et al., 2012). The system is based on a Cas9 nuclease which can be targeted to a specific genomic sequence by an easily engineered single guide RNA (sgRNA) of 20 base pair (bp). A protospacer adjacent motif (PAM) is needed adjacent to the 3’ end of the 20 bp target. Originally, the purpose of the PAM sequence was to distinguish self from non-self in prokaryotes.
The CRISPR/Cas technology has become the preferred method for making targeted mutations in plants without undesired side mutations, due to ease of use, precision, efficiency, and low cost (Shan et al., 2013; Kumar et al., 2020), and since first reported a long range of rapports on modifications in crops have been reported in multiple plant species (Gupta et al., 2019). Ease of multiplexing, i.e., the simultaneous targeting if several genes with a single molecular construct, is another major advantage of CRISPR/Cas9 technology compared to ZFN and TALEN (Shan et al., 2013; Lowder et al., 2016; Ma et al., 2016; Čermák et al., 2017; Kumar et al., 2020). Although many report the use of CRISPR techniques in the coding sequence of genes, they can be used in promoters and upstream open reading frames as well (Holme et al., 2017; Rodríguez-Leal et al., 2017; Si et al., 2020). Recently DNA editing in plant plastics has also become a possibility (Kang et al., 2021).
The technology is quickly developing (Zhu et al., 2020), and new CRISPR nucleases like Cas12a creating 5´overhangs or nucleases having different PAM recognition sites are constantly expanding the perspective (Jaganathan et al., 2018; Swarts and Jinek, 2018). Very recently, PAM-less CRISPR systems are emerging (Ren et al., 2021). Nucleases that only make a single-strand break (nickases) can be used in pairs, each requiring a sgRNA. By positioning the two nicks close to each other on opposite strands, a break is created. As two sgRNAs are required, this paired nicking dramatically increases the specificity and thus reduces off-targeting in unwanted places. HDR is still challenging in plants and several developments in the CRISPR techniques have been developed to overcome this problem. Adenine base editors (ABEs) changing adenine (A) to guanine (G) and cytosine base editors (CBEs) changing cytosine (C) to thymine (T) are now working in plants (Zong et al., 2018; Hua et al., 2020). A new technique for editing is the prime editing technique, where bases in the target site is edited based on the sequence of a prime editing guide RNA (Lin et al., 2020; Zhu et al., 2020; Zong et al., 2022). Further, multifunctional genome editing systems are now emerging, making it possible to do both base editing and knockout simultaneous using a single construct (Li et al., 2020). On top of local changes such as minor deletions/insertions and base editing, the introduction of bigger structural variations are now also possible (Lu et al., 2021). Some new techniques are firstly developed for monocots and optimization might be needed to use them in dicots such as Cannabis.
Online tools are available to guide the design of efficient sgRNAs. Five different sgRNA designing tools and their main characteristics have been reviewed by Hesami et al. (2021a). The algorithms in such programs are developed based on the assessment of many thousands of gRNAs targeting genes. However, most tools are not developed based on plant data and the predicted efficiency is not always in accordance with the found results (Pauwels et al., 2018; Naim et al., 2020). An updated tool based on plant data is needed to increase the efficiency of plant sgRNAs.
It must be stressed that for gene editing techniques, the precise genetic sequence of the cultivar at hand is needed in order to design guides. This means that both alleles of each candidate gene to be targeted must be sequenced. Further, the availability of genomic sequence information not only provide the candidate genes for targeting but also gives the opportunity to analyze for possible off-targets, not only in gene families with high sequence similarity but also unexpected off-targets in unrelated genome regions. However, a very accurate screening for off-targets might be difficult in the highly heterozygous Cannabis genome.
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Only genotypes from which shoots were obtained are included. a number estimated from figure.
In general, finding the right growth medium seems to be very cultivar dependent (Grulichova et al., 2017; Codesido et al., 2020; Stephen et al., 2023). This makes it difficult to compare studies using different combinations of cultivars and media. It remains to be uncovered if this is due to a very limited number of plants being very willing to respond in vitro, or whether the ideal medium composition still needs to be discovered. This cultivar dependence implies that the use of hemp as a proxy for medicinal type Cannabis may not be successful (Page et al., 2021). Although there might not be a big difference in multiplication rate between fiber and drug types (Table 1). The results might also be dependent on whether the starting material is taken directly from the greenhouse or from tissue that has been in tissue culture for some time. The position (basal versus apical) of the stem explant also seems to affect multiplication rates (Hesami et al., 2023). There could be a lingering effect from plant growth regulators found in plants with roots that might influence the multiplication rate (Page et al., 2021). A high number of shoot proliferation has been reported in some cases (Lata et al., 2009a; Lata et al., 2016) but in most cases the number of shoots per explant is only between 2 and 3 (Table 1). The use of floral reversion might be a way to move forward, as this method increased the multiplication rate up to eightfold (Piunno et al., 2019; Monthony et al., 2021a). It should be noted that achieving the highest multiplication rate might give lower quality and lower rooting ability (Stephen et al., 2023). Rooting is very important for successful micropropagation and has been a topic in several papers (e.g.: Zarei et al., 2021; Ioannidis et al., 2022a; Kurtz et al., 2022; Stephen et al., 2023).
There is a general need for improvement in more cultivars, if micropropagation should be of general use. Scientific research can be successful, even though a very limited (or only one) number of plant cultivars can be used. However, in production, medical Cannabis growers need to be able to use the technique in all their material before they invest in tissue culture facilities. It is most probable that several companies already have developed successful protocols for micropropagation. Most of these are, however, kept as trade secrets, if not funded by public means (Adhikary et al., 2021; Zarei et al., 2023). Resent papers show that improvement of micropropagation is still an interest also in universities (Borbas et al., 2023; Hesami et al., 2023; Stephen et al., 2023) and new methods, such as the use of bioreactors (Rico et al., 2022), photosynthetic proficiency measurements (Pepe et al., 2022) and photoautotrophic micropropagation (Zarei et al., 2021) have been investigated.
Micropropagation using synthetic seeds has been investigated as an alternative solution for propagation and conservation of germplasm. The use of synthetic seeds in Cannabis was first reported by Lata et al. (2009b; Lata et al., 2012) using the cultivar MX. Recently, a paper on commercial scale synthetic seed production using the elite cultivar ‘Slurricane’ was published (Zarei et al., 2022). The developed method was very successful, as a regrowth rate of 100% was seen after storage for 150 days. Cryopreservation has also been investigated as a means for long term storage on in vitro material (Lata et al., 2019; Downey et al., 2021). Although these methods are not of immediate importance for genome editing, they represent valuable ways of storing high-value material such as modified cultivars.
Recalcitrance is a common problem in tissue culture (Altpeter et al., 2016). For years, many different combinations of explants and plant growth regulators have been used to try to solve the difficulty of regenerating plants from very many species, often without great success. The ability to regenerate seems to be not only species dependent but also cultivar dependent. The recalcitrance might be linked to a very high degree of apical dominance and/or difficulties in cellular reprogramming of already differentiated cells (Sugimoto et al., 2019), making the generation of shoots difficult. This calls for further research into whether there is a general explanation for recalcitrance to regenerate across plant species.
Testing many different combinations of explant type, explant age, type of gelling agent, type of carbohydrate source, type, and balance of PGRs and addition of other supplements such as Zn or polyamines is often tedious and time consuming, sometimes with a low success rate. This process might be optimized using the ability of machine learning to discover non-linear relationships and concealed interactions (García-Pérez et al., 2020). Machine learning has already been used in Cannabis to optimize in vitro seed germination (Hesami et al., 2021b; Pepe et al., 2021a; Aasim et al., 2022) and to study in vitro shoot growth and development (Pepe et al., 2021b) and callus morphology (Hesami and Jones, 2021). Further, as many research projects are performed by PhD students and post docs, with a strong demand for an outcome of scientific papers, the focus is often turned away from comprehensive, long-term research aiming at optimizing regeneration protocols. There might also be a lack of reports showing negative results. All this might have slowed down the progress of regeneration.
A direct comparison between experiments is sometimes difficult as results are given as responding explant % or number of shoots per shooting explant (Table 2). Although the lowest percentage of responding explants is reported in hemp (Slusarkiewicz-Jarzina et al., 2005), there is not a clear trend for a difference between hemp and drug type cultivars. The biggest difference can be explained by the type of explants used. Experiments using hypocotyl, stem, or stem nodes have a higher response rate in general (Table 2) (Wielgus et al., 2008; Galán-Ávila et al., 2020; Önol and Yildirim, 2021; Galán-Ávila et al., 2021b).
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One experiment, using leaf explants, stands out, as almost all explants gave shoots, with an average of 12.3 shoots per callus (Lata et al., 2010). This study has been replicated using ten other drug type Cannabis genotypes (Monthony et al., 2021b). Here, the experiment failed to induce shoots in all the genotypes tested, making it clear that regeneration might not only be tissue specific but also very dependent on genotype. The importance of genotype for regeneration in Cannabis is stressed by the fact that Zhang et al. found a regeneration rate varying from 0 to 7% when screening one hundred genotypes (Zhang et al., 2021). Further, the lack of reproducibility stresses the difficulty of transferring tissue culture methods to other laboratories.
Recently, Galán-Ávila et al. published two papers showing a very high percentage of direct regeneration without a callus phase from hypocotyls (Table 2) (Galán-Ávila et al., 2020; Galán-Ávila et al., 2021b). These results are very promising but remains to be seen whether this method can be transferred to medical Cannabis.
Hairy root cultures often have an enhanced ability to synthesize secondary metabolites (Srivastava and Srivastava, 2007). Hairy root cultures were established after transformation with A. rhizogenes in hemp as well as drug-type Cannabis (Wahby et al., 2013; Wahby et al., 2017). Several types of media containing a range of different combinations of hormones were tried, but although callus developed from the hairy root cultures, no shoots were obtained (Wahby et al., 2017). No cannabinoids were present in the hairy root cultures. Similarly, no cannabinoid production was found in cell suspension cultures (Flores-Sanchez et al., 2009). Contrary, hairy root cultures developed from callus without the use of A. rhizogenes produced a very low level of cannabinoids (Farag and Kayser, 2015). The level of cannabinoids might be dependent on the variety of plant and/or of the plant variety-bacterial stain combination. However, higher levels would probably be toxic to the cultures. The ability of callus cultures to form roots was also seen by Feeney and Punja (2003). Unfortunately, regeneration of plants from hairy roots, although possible in some species (Crane et al., 2006; Lütken et al., 2012; de la Torre et al., 2018), is often quite challenging and has not yet been reported in Cannabis.
Transformation using Agrobacterium tumefaciens is often used in plants, both for transient and stable transformation (Dunwell and Wetten, 2012; Krenek et al., 2015). Studies with wild-type A. tumefaciens (MacKinnon et al., 2001; Wahby et al., 2013) as well as recent papers (Tables 3, 4) (Galán-Ávila et al., 2021b; Zhang et al., 2021) show that genetic transformation of Cannabis is possible. However, there seems to be a cultivar difference in the susceptibility to A. tumefaciens. As the infection with Agrobacterium might be considered as a pathogen attack by the plant and the secondary metabolites is known to protect Cannabis against pathogens (McPartland, 1984; Wanas et al., 2016), the difference in susceptibility might be explained by a difference in the secondary metabolite profile (Sorokin et al., 2020). This might partly explain why all stable transformations in Cannabis is done in hemp cultivars (see below; Table 4).
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Most probably, the recalcitrance in Cannabis explants is also due to the developmental state of the explants. In many plants, the first choice of explant material for transformation would be very young tissue, like that obtained from young seedlings. Such material is easily obtained from hemp, where seeds are available in big amounts. In medical Cannabis, however, very specific combinations of cannabinoids and terpenes might be lost if seeds must be produced. A method where the meristems of medical plants could be the starting material, is therefore highly adventitious. Recent reports show transformation on existing meristems, in vitro or in planta is possible (Galán-Ávila et al., 2021b; Pandey et al., 2022). Further, developmental regulators can be used to induce new meristems from somatic cells during the transformation process (Maher et al., 2020). One should be aware that the plants obtained from these meristematic techniques might have a higher degree of mosaic tissue than plantlets obtained by regeneration via callus.
Within the last six years several papers report transient transformation in Cannabis using not only reporter genes such as GUS or GFP, but also the down regulation of genes using virus induced gene silencing (VIGS) or RNAi (Table 3). A study from 2013 (Wahby et al., 2013) showed that both hemp and drug type Cannabis is susceptible to wild type A. tumefaciens infection and it is thus not surprising that the most frequently used method for transient transformation is agroinfiltration by vacuum or by using a needleless syringe. A patent by Roscow JR. (2017) describes transient methods to transform Cannabis by vacuum infiltration or by dipping the green parts into an Agrobacterium soup where after vacuum is applied. The treated plant parts were producing trichomes comprising secondary compounds on non-flowering parts of the plant. It is, however, unclear if this property was inherited to the next generation. Transient transformation using agroinfiltration is also reported by several others (Schachtsiek et al., 2019; Deguchi et al., 2020; Sorokin et al., 2020; Matchett-Oates et al., 2021b). Results show that the recalcitrance to be transformed might be due to the plants ability to protect itself against pathogen attack, as the addition of ascorbic acid, scavenging excess ROS, had a positive effect of the transformation efficiency (Deguchi et al., 2020). Other methods for transient transformation include vacuum infiltration of DNA coated gold nanoparticles (Ahmed et al., 2021) and transformation of protoplasts using PEG (Beard et al., 2021; Matchett-Oates et al., 2021a; Kim et al., 2022; Zhu et al., 2022).
Transient transformation, although not leading to stably transformed plants, is a very useful tool for overexpression and silencing studies of many genes. Valuable information about the interaction between Cannabis and Agrobacterium which might be used to improve stable transformation. It seems that transient transformation is possible in both hemp and drug-type material (Deguchi et al., 2020; Sorokin et al., 2020; Matchett-Oates et al., 2021b), which gives the hope that stable transformation will also be possible in medical Cannabis.
Stable transformation is likely needed for genome editing of Cannabis. The first successful stable transformation of hemp was reported by MacKinnon et al. (2001) in the Scottish Crop Research Institute Annual Report. The report gives very little information about the methods used and the transformation efficiency obtained. Hemp suspension culture cells were transformed by Feeney and Punja in 2003 (Feeney and Punja, 2003). Although showing a transformation rate up to 55%, no plant regeneration was obtained. After these two 20-year-old papers, stable transformation was not reported for almost 15 years, most probably reflecting the lack of success of regenerating transformants.
A patent filed by Sirkowski (2012) describes a method for Agrobacterium-mediated transformation of medical Cannabis. The material used is sections of hypocotyl and plants are regenerated from the tissue, but the efficiency is not mentioned. It is not clear in which genotypes the regeneration was successful and if plants were regenerated directly via a callus phase.
Very recently, two groups have been able to stably transform hemp (Galán-Ávila et al., 2020; Zhang et al., 2021) (Table 4). In the method developed by Galán-Ávila et al. (2021b) shoots are regenerated directly from hypocotyl, cotyledon, or meristems without a callus phase. This transformation system is very fast as tissue could be analyzed for GUS already one month after transformation. Both genotypic and explant differences were observed, with the least genotype dependency and the highest transformation rate found using hypocotyls. This method seems very promising, but the use of hypocotyls might be hampering the transferability to medical Cannabis that is usually propagated using cuttings. However, there was a low transformation rate using meristems as one transformant from one genotype was obtained from this material.
The first paper describing the use of genome editing in Cannabis was published in 2021 (Zhang et al., 2021). Using immature embryo hypocotyls from hemp as a starting material, shoots were regenerated from callus. The phytoene desaturase gene was knocked out using CRISPR/Cas9, giving an albino phenotype. Zhang et al. used a recently developed method, where co-transformation with a GRF-GIF chimeric protein showed a substantially increased efficiency and speed on regeneration, also in recalcitrant genotypes (Debernardi et al., 2020). This was also useful in Cannabis, as overexpression of the developmental regulator chimera CsGRF3-CsGIF1 almost doubled the regeneration rate (Zhang et al., 2021).
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As seen in recent experiments, very young hemp tissue can, although maybe not easily, be transformed and regenerated into plants (Galán-Ávila et al., 2021b; Zhang et al., 2021). There is without doubt genotype dependency, not only between chemotypes but also between hemp cultivars. The use of CsGRF3-CsGIF1 in Cannabis and the use of a WUSCHEL family gene in wheat, T. monococcum, triticale, barley, and maize are examples where developmental regulators can overcome at least some of the genotype dependency (Zhang et al., 2021; Wang et al., 2022). It is our belief that the future will bring more improvements and refinements as recalcitrance to regeneration and genotype dependency is found in several plant species.
Using hypocotyls from immature embryos for transformation in medical Cannabis is not the obvious choice. The plants are usually clonal propagated to maintain valuable cannabinoid and terpene profiles, which will be changed if plants are propagated by seeds. Recently, promising results showing regeneration from drug type Cannabis using leaf segments and stem nodes have emerged (Önol and Yildirim, 2021; Hesami and Jones, 2021). Methods avoiding young material from seeds also include transformation on existing meristems (Galán-Ávila et al., 2021b) and the induction of new meristems from somatic cells (Maher et al., 2020). All these methods need to be thoroughly investigated in many genotypes of medical Cannabis. The possible outcome of the combination of floral reversion and transformation should also be pursued.
Due to the multiple applications of Cannabis, many traits might be interesting to improve. Single gene traits are easier to work with than very complex traits. However, successful editing of several genes is reported in other species (Gao et al., 2017; Mercx et al., 2017; Morineau et al., 2017) and might also be feasible in medical Cannabis as soon as a versatile transformation platform is established.
Clean cannabinoid products can be obtained by producing them in other systems like yeast (Luo et al., 2019). However, the therapeutic response is often higher using plant products, probably due to a synergistic or entourage effect between various cannabinoids or between cannabinoids and terpenes (Ferber et al., 2020). Genome editing tools would be very useful to study and manipulate the biosynthetic pathways of cannabinoids and terpenes, not only for pure scientific purposes, but also to improve the products in the medical Cannabis industry. Gene editing facilitates gene knockout studies as well as studies altering gene expression levels and tailoring of specific genes. The review by Hesami et al. (2022) lists several ideas for the use of CRISPR-based methods for optimizing cannabinoid production using in vitro culture and heterologous systems.
The THCA and CBDA synthases are of special interest, as they are responsible for the synthesis of the two main cannabinoids, THC acid and CBD acid from the common precursor, CBGA. The sequences of these synthases are very similar, and studies have shown that they are positioned at two closely linked loci in a very complex region (Van Bakel et al., 2011; Laverty et al., 2019; Vergara et al., 2019). This complexity makes it challenging, although not impossible, to make changes using genome editing, as guides need to be designed to hit target genes without off-target effects.
As THC is psychoactive, there is a demand for plants completely free of THC. It is essential that drug formulations contain as low a THC content as possible as the THC contamination causes short- and long-term side effects (Volkow et al., 2014). The use of extra purified CBD or synthetic CBD instead of the plant extract results in a lack of other naturally occurring cannabinoids and bioactive compounds such as terpenes involved in the entourage effect. This may have a decisive influence on the therapeutic effect of the product (Russo, 2019). However, Cannabis varieties bred for high CBD content always contain small amounts of THC.
The hemp cultivar Finola has no THCA synthase (Laverty et al., 2019), but still a small amount of THCA is produced (Pavlovic et al., 2019). This presence of THC in CBD-varieties is due to a promiscuous CBDA synthase producing up to 5% THCA (Zirpel et al., 2018). In yeast model systems, site-directed mutagenesis has been performed in THCAS and CBDAS to investigate the importance of amino acids for activity and specificity. One amino acid change at A414V increased the catalytic activity 3.3-fold and caused a shift in specificity profile from CBDA to THCA production (Zirpel et al., 2018). Further studies are needed to uncover the potential of modulating the specificity of this enzyme in planta. CRISPR technology would be the obvious choice for inducing base editing in the CBDA synthase and modulate enzyme activity towards making the synthase completely specific for CBDA production.
Another need is to produce plants with a higher content of rare cannabinoids or to change the content of different terpenes independent of the cannabinoid profile. CBG is a compound having medical properties of its own, but it is often present in quite low levels. Knocking out both THCA and CBDA synthases by genome editing would result in a plant with a higher level of CBG.
Genome editing approaches have been used to obtain resistance against plant diseases caused by viruses, fungi, and bacteria (Borrelli et al., 2018), as inactivation of susceptibility genes often gives resistance. This is highly relevant in medical Cannabis production as the loss of production batches due to attack by fungal diseases is a serious problem. The plants cannot be treated with fungicides as traces of these compounds might be found in the final product. Controlling the humidity is highly energy demanding, but if not done, production batches might be lost.
Amino acid changes in the Mlo gene(s) are known to give resistance against powdery mildew in a range of plants (Kusch and Panstruga, 2017). In medical Cannabis, where the use of pesticides is not possible, the growth of resistant plants is highly desirable. When medical Cannabis is produced in greenhouses, there is a high humidity, which is the perfect environment for the development of the fungal disease powdery mildew. CRISPR-mediated changes in the Mlo gene would give resistance against powdery mildew without any site effects in the cannabinoid production. Pleiotropic effects might occur when the Mlo gene is mutated (Jørgensen, 1992). Whereas some Mlo mutations seem to be without or with only minor pleiotropic effects, TALEN-derived mlo wheat plants with the triple knockout mutations show strong chlorotic symptoms (Jørgensen, 1992; Acevedo-Garcia et al., 2017). This suggests that carefully selected base editing might be preferred over CRISPR/Cas-mediated knockout.
Grey mold due to the fungus Botrytis cinerea is a severe problem in indoor Cannabis production. Botrytis is a necrotrophic fungal pathogen, but it apparently starts its infection in a biotrophic manner (Veloso and van Kan, 2018). Rather than indiscriminately killing its host, Botrytis gently guides the host plant towards committing suicide through apoptosis, making the fungus able to colonize and digest the plant tissue. If the spore density is low, the infected plants might be without symptoms. When these asymptomatic plants approach flowering, the fungus might switch to necrotrophic lifestyle causing the host plant to succumb (Veloso and van Kan, 2018). This might be the reason why growers often see a very sudden, severe attack of grey mold. Although the molecular mechanisms are not fully understood, silencing of susceptibility genes has been shown to impede infection (Sun et al., 2017). This and similar research might lead the way for (some) resistance against Botrytis obtained by genome editing.
There is a strong apical dominance in Cannabis (Smýkalová et al., 2019). Varieties with less apical dominance might be easier to regenerate in tissue culture and would therefore be the obvious candidates for transformation. Removal of apical buds or the application of plant growth regulators such as phytohormones change plant architecture, giving lower and more branched plants (Kocjan Ačko et al., 2019; Burgel et al., 2020). These more uniform plants make harvest of inflorescences easier. Although apical bud removal in hemp gives higher seed yield (Kocjan Ačko et al., 2019), it is unclear whether higher cannabinoid yield will be found in plants with a changed architecture due to genetic changes. However, plants treated with phytohormones showed the same or reduced inflorescence dry weight, dependent on genotype, with no change in CBD content (Burgel et al., 2020). Although drug type Cannabis, due to selection, has become shorter and more densely branched, there is a great demand for varieties with a standardized plant type, not least with same height and branching, as such plants are suitable for automation. Thus, genes involved in apical dominance, branching and plant height would be very interesting candidates for genome editing.
As mentioned in the doubled haploid section, haploid inducer lines can be produced using CRISPR/Cas to knock out the centromere-specific histone H3 (CENH3) (Kelliher et al., 2019). This would be a very useful technique to use in Cannabis, where no successful doubled haploid technique is yet available. With a robust transformation platform in Cannabis, haploid inducer lines obtained with this technique is surely possible. Haploid-inducer lines with a hemp genetic background would be useful in medical Cannabis as well, as the haploids will not contain any parental DNA from the haploid-inducer parent. Once established, the haploid-induces lines can carry a CRISPR/Cas cassette that would give edited haploid offspring without the editing machinery (Wang et al., 2019).
There are several other traits of general interest for Cannabis production, also in hemp cultivars. Flowering time, fiber quality, lower phytic acid content of seeds, and soil remediation properties are obvious candidates for investigation via genome editing (Shiels et al., 2022).
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Cannabis has traditionally been considered a recalcitrant species, in which techniques like genetic transformation and genome editing were very complicated. However, our review providing insight into recent progresses within tissue culture, genetic transformation, gene editing and necessary sequence information on Cannabis sativa indicates that this is not the case anymore. Currently, plant regeneration has been reported not only in hemp but also in a few medical Cannabis cultivars. Regeneration improvements using developmental regulators has facilitated the first report on CRISPR/Cas9 mediated genome editing in hemp. Our study suggests that future efforts could be directed towards development of a robust regeneration protocol for differentiated or meristematic tissue from medical Cannabis and thereby form the basis for future targeted improvements of medical Cannabis.
Genome editing is a great tool for scientific investigations and precision breeding for secondary metabolites such as cannabinoids and terpenes. Expression of genes related to these compounds can be fine-tuned or completely removed by editing promoters and/or genes. Precision breeding further gives the possibilities to add new traits such as disease resistance or changed plant architecture without meddling with a known cannabinoid profile. Conventional methods adding new genetic variation will continue to be a corner stone in breeding but once transformation is a routine tool in Cannabis, there are almost unlimited possibilities to improve a wide range of plant traits. Furthermore, since medical cannabis is often grown under contained facilities, any GM regulatory requirements of genome edited plants will be easier to meet.
Published online 2023 Jun 8. doi: 10.3389/fpls.2023.1154332
PMCID: PMC10285108
PMID: 37360738
Challenges and potentials of new breeding techniques in Cannabis sativa
Christina Rønn Ingvardsen
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Abstract
Cannabis sativa L. is an ancient crop used for fiber and seed production and not least for its content of cannabinoids used for medicine and as an intoxicant drug. Due to the psychedelic effect of one of the compounds, tetrahydrocannabinol (THC), many countries had regulations or bands on Cannabis growing, also as fiber or seed crop. Recently, as many of these regulations are getting less tight, the interest for the many uses of this crop is increasing. Cannabis is dioecious and highly heterogenic, making traditional breeding costly and time consuming. Further, it might be difficult to introduce new traits without changing the cannabinoid profile. Genome editing using new breeding techniques might solve these problems. The successful use of genome editing requires sequence information on suitable target genes, a genome editing tool to be introduced into plant tissue and the ability to regenerate plants from transformed cells. This review summarizes the current status of Cannabis breeding, uncovers potentials and challenges of Cannabis in an era of new breeding techniques and finally suggests future focus areas that may help to improve our overall understanding of Cannabis and realize the potentials of the plant.Keywords: Cannabis sativa, medical Cannabis, drug type Cannabis, genome editing, plant regeneration, transformation
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Introduction to medical Cannabis
Cannabis (Cannabis sativa L.) is an annual, predominantly dioecious (male and female flowers occur on separate plants), rarely monoecious (male and female flowers occur on the same plant) plant (Chandra et al., 2020). It is wind pollinated and flowers under short day conditions. Cannabis has a diploid genome (2n = 20) and its karyotype is composed of 9 pairs of autosomes and one pair of sexual chromosomes (X and Y) (Divashuk et al., 2014). The plants have been used by man for at least 6000 years (Li, 1974). The existence of an extant natural population is doubtful, and any ‘wild’ species might be naturalized from domesticated plants indicating that the current genetic variation is most probably due to the action of man (Small, 2017). Cannabis has traditionally been classified as a single species (Small and Cronquist, 1976). This is supported by molecular studies (Oh et al., 2016; Zhang et al., 2018). However, Cannabis is often divided into subspecies or groups based on chemotype, ecotype, crop-type (fiber or drug) or leaflet morphology (Grassi and McPartland, 2017; McPartland, 2017; Small, 2017). Grouping is often problematic, as the types readily inter-cross and a lot of hybrids exist and as classification based on crop-type is somewhat dependent on legislation. In this paper, we focus on Cannabis used for medical purposes, e.g., plants with a high level of cannabinoids, and will therefore use the term hemp for Cannabis grown for fiber and seeds and the term medical or drug type Cannabis for varieties grown for their cannabinoid content, independent of the tetrahydrocannabinol (THC)/cannabidiol (CBD) ratio.Cannabis produces a range of secondary metabolites, the best known are the phytocannabinoids. Although as many as 120 different cannabinoids have been reported (see Radwan et al. (2017) for review), the most abundant cannabinoids are THC, CBD, cannabigerol (CBG) and cannabinol (CBN) (Flores-Sanchez and Verpoorte, 2008; Fischedick et al., 2010; ElSohly et al., 2016). Tetrahydrocannabinolic acid (THCA) and cannabidiolic acid (CBDA) are made from the common precursor, cannabigerolic acid (CBGA) whereas CBN is an oxidation product of THC. Acidic forms of cannabinoids are biosynthesized in the trichomes on the female flowers (Sirikantaramas et al., 2005; Livingston et al., 2020). The storage of the toxic cannabinoids in trichomes minimizes the risk of self-intoxication (Sirikantaramas et al., 2005). The acidic forms are spontaneously decarboxylated into THC and CBD by heat and light. THC is the main psychoactive compound in drug type Cannabis (Pertwee, 1988), but also beneficial effects are reported (Grotenhermen, 2003). Moreover, other cannabinoids, especially CBD, have attracted interest for their pharmacological properties. CBD has been reported to act as an antidepressant, to relieve pain and anxiety and to reduce inflammation. It is believed to have beneficial effects in a variety of diseases, such as Alzheimer’s and Parkinson’s diseases, multiple sclerosis, Huntington’s disease, epilepsy, and cancer (Pisanti et al., 2017). The resin from the glandular trichomes also contain terpenes (Flores-Sanchez and Verpoorte, 2008). Terpenes does not only add flavor to the product but also have medical properties, not least in synergic action (entourage effect) with cannabinoids (Ferber et al., 2020).
In planta, the secondary metabolites are believed to protect the plants against various pathogens and insects. Both cannabinoids and terpenes have been shown to possess antifungal activity (McPartland, 1984; Wanas et al., 2016) and to be toxic to insects (Taura et al., 2007; Mithöfer and Boland, 2012; Bedini et al., 2016). Although the active component is not known, Cannabis resin might have antibacterial activity (Radošević et al., 1962) and extract of Cannabis leaves is active against nematodes (Mukhtar et al., 2013).
Solving the many challenges in Cannabis sativa calls for the use of all available tools. In the current review, we discuss the challenges and possibilities for New Breeding Techniques, such as genome editing in medical Cannabis. To set the scene, we first present a brief status of Cannabis breeding and the level of genetic diversity. We then address the requirements for successful tissue culture and transformation with a focus on the status of micro propagation, regeneration and transient as well as stable transformation. Finally, we discuss the many opportunities for using genome editing in the improvement of medical Cannabis.
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Breeding, genetic diversity and genetic markers
Breeding
Due to the high-value products, medical Cannabis is often produced in greenhouse or indoor facilities where the plants are propagated like a horticultural crop using stem cuttings (Vassilevska-Ivanova, 2019; Monthony et al., 2021c). The use of cuttings ensures that only female plants with a higher level of cannabinoids are used for production. The dioecy behavior of Cannabis, making it an obligately outbreeding species, the limited number of genetic markers and the anecdotal start of breeding of medical cultivars make breeding of drug type Cannabis challenging. Early breeding was selection, done by the illegal market with decades of interbreeding and hybridization without record of parentage (Barcaccia et al., 2020; Gilchrist et al., 2023). This means that the genetic identity of a medical Cannabis strains cannot be reliably inferred from its name, as studies have shown that some strains with different names were genetically similar, and some strains with identical names were genetically different (Sawler et al., 2015; Dufresnes et al., 2017; Punja et al., 2017; Reimann-Philipp et al., 2020; Adhikary et al., 2021). However, the fact that breeding has been illegal does not mean that it is inefficient, as the level of THC has increased (Mehmedic et al., 2010). For a comprehensive review on medical Cannabis breeding, readers are referred to Barcaccia et al. (2020).The level and composition of cannabinoids and terpenoids as well as stability in production, flowering time and lower resource input are in focus in modern medical Cannabis breeding, with more focus on CBD and other non-psychoactive cannabinoids. Resistance against insects, pathogens and viruses is also in high demand. Healthy mother plants are essential. However, maintenance of mother plants in contained humid environments poses a challenge in relation to attacks by plant pathogens such as powdery mildew. This significant challenge can only be kept at tolerable levels by a strict growth control including air circulation, ventilation, and moisture control as the strict regulations for medical products do not permit any use of pesticides.
Doubled haploids
The production of doubled haploids (DH) in Cannabis would be highly advantageous, as it would be possible to produce female pure lines in one generation. Haploid plants have in other plant species been produced via androgenesis (anther or microspore culture), gynogenesis, parthenogenesis or wide hybridization-chromosome elimination (Ishii et al, 2016; Hooghvorst and Nogués, 2021). Later chromosome duplication in the haploid plants is performed, either spontaneously or by chemical treatment. Although DH production via microspore culture has been investigated in Cannabis, successful DH production has so far not been established (Adhikary et al., 2021). Cannabis seems to be recalcitrant to androgenesis induction, although very few embryos can be developed (Galán-Ávila et al., 2021a). The method used for successful doubled haploid production seems to be species dependent wherefor also the other methods should be investigated for their usefulness in Cannabis. Recently, CRISPR/Cas have been used to develop haploid-inducer lines in both monocot and dicot plants (Kelliher et al., 2019). As also suggested by others (Hesami et al., 2021a; Simiyu et al., 2022), this method might be very useful in Cannabis.Polyploidization
Polyploidization is used as a tool in plant breeding to improve desirable plant characteristics such as larger organs and higher yield (Sattler et al., 2016). Even though the expected “giga” effect is not always achieved, higher production of secondary metabolites in autotetraploid medical plants is seen in several cases as reviewed by others (Dhawan and Lavania, 1996; Iannicelli et al., 2020; Niazian and Nalousi, 2020). As genomic stress occurs after polyploidization, genomic rearrangements, gene loss and/or changes in gene expression might occur (Iannicelli et al., 2020; Niazian and Nalousi, 2020). This might give a changed chemical profile with lower or even missing production of secondary metabolites, making it difficult to predict the outcome of polyploidization in new species or even other genotypes.In Cannabis, the effect of polyploidization has been studied in hemp as well as drug-type Cannabis (Bagheri and Mansouri, 2015; Mansouri and Bagheri, 2017; Parsons et al., 2019; Hesami et al., 2021a). In both types, the tetraploid plants had broader leaves with bigger and less dense stomata, both clear signs of polyploidization. Cuttings of the drug-type Cannabis had reduced rooting ability, a phenomenon also observed in hop (Trojak-Goluch and Skomra, 2013; Parsons et al., 2019). When the level of cannabinoids was analyzed, only small changes were found. Levels of CBD was increased by 9%, whereas the level of THC was unchanged in drug-type Cannabis (Parsons et al., 2019). In the hemp-type plants, the level of THC was reduced in the female flowers with no change in the amount of CBD (Bagheri and Mansouri, 2015).
The terpene profile was not analyzed in the hemp-type Cannabis, but in the drug-type, the terpene profile changed after polyploidization, as mainly the contents of sesquiterpenes increased (Parsons et al., 2019). A change in terpene profile after polyploidization was also found in hop. Although the general level was lower, there was an increase in terpenes desirable for the brewing industry (Trojak-Goluch and Skomra, 2013).
These experiments did not show very promising results as far as an increase in cannabinoid is concerned. It should be reminded, however, that only one genotype per experiment gave tetraploid plants that could be analyzed. As there is often a difference between genotypes, the effect of polyploidization on the level of cannabinoids, terpenes and other important traits might have a different and more positive outcome in other trials, not least after crossing of polyploids with different genetic backgrounds.
Genetic structure and diversity
Several studies using STRUCTURE analysis position hemp and drug type Cannabis in separate clusters (Sawler et al., 2015; Lynch et al., 2016; Dufresnes et al., 2017). The genetic differences between the groups are distributed across the genome and are not restricted to loci involved in cannabinoid production (Dufresnes et al., 2017b; Sawler et al., 2015). Whether hemp or drug type Cannabis is having more heterozygosity seems to depend on the study, which probably reflects differences in the selected cultivars (Sawler et al., 2015; Lynch et al., 2016). The lower genetic diversity in drug type Cannabis compared to hemp found in some studies (Sawler et al., 2015) might be due to inbreeding and genetic bottlenecks in the illegal Cannabis production. However, studies including a broader set of genotypes are needed to create more knowledge about the heterozygosity of Cannabis from all regions (Kovalchuk et al., 2020). Such studies also provide the widest genetic background for medical Cannabis breeding.Genetic markers such as single sequence repeats (SSRs) and Inter Simple Sequence Repeats (ISSR) have shown a high degree of genetic diversity in drug type Cannabis (Punja et al., 2017; Soler et al., 2017; de Oliveira Pereira Ribeiro et al., 2020). The analyses not only showed diversity between but also within cultivars (Punja et al., 2017; Soler et al., 2017). The high diversity within a cultivar means that hardly any reduction in the genetic variation was found after one round of selfing (Punja and Holmes, 2020). Some of this high variation found after selfing might be due to accumulation of somatic mutations within plants been propagated as cuttings for a long time (Adamek et al., 2022).
The high genetic diversity found in Cannabis is very useful for breeding new varieties. For medical Cannabis, however, homogenous material is needed, and varieties must be multiplied via cuttings. Introduction of single gene traits like disease resistance genes in Cannabis by traditional cross breeding, without affecting the genetic background and thereby the cannabinoid and terpene profile is difficult. Genome editing might solve this issue, see below.
Use of genetic markers
The use of genetic markers in drug-type Cannabis has mainly focused on analysis of Cannabis samples and plants to discriminate between hemp type and drug type material, to evaluate genetic variance and to identify female plants. Some examples will be highlighted here, for more comprehensive information, especially on early work, readers are referred to Onofri and Mandolino (2017); Punja et al. (2017) and Hesami et al., 2020. Further, a panel of 41 robust SSRs, with an average of four markers per chromosome, is provided by Barcaccia et al. (2020).Markers for chemotype
As drug type Cannabis is illegal in many countries, there is a great need to be able to detect the presence of this type of Cannabis in seized samples. An important issue to consider here is the balance between speed, simplicity of the analysis, affordability, and accuracy. Many different assays have been developed, not only to discriminate between hemp and drug types, but also to establish from which geographic location the sample might originate.The simplest form of markers is based on the genes for tetrahydrocannabinolic acid synthase (THCAS) and cannabidiolic acid synthase (CBDAS). As DNA extracted from the seized material is analyzed, there is no need to wait for plants to grow in case of seed material or to extract cannabinoids to analyze for the level of THC and CBD. The markers reported by Kojoma et al. (2006) and Rotherham and Harbison (2011) was based on THCAS, only. At the time, it was believed that the two enzymes belonged to the same locus so that plants having the THCA synthase would contain only THC or a mix of THC and CBD. Other markers are based on both THCAS and CBDAS sequences (Weiblen et al., 2015; Welling et al., 2016; Cascini et al., 2019; Toth et al., 2020), which is in line with newer information showing that the two enzymes are found in two closely linked loci (Laverty et al., 2019).
Other types of markers have also been shown to be useful; autosomal microsatellite markers and markers based on mitochondrial and chloroplast DNA. SSR’s have been used to differentiate between samples (Soler et al., 2016; Dufresnes et al., 2017; Houston et al., 2017; Soler et al., 2017; Houston et al., 2018; de Oliveira Pereira Ribeiro et al., 2020; Ioannidis et al., 2022b). It seems that a limited number of markers, from 6 to 13, is enough, not only to sort Cannabis from hop, but to individualize and differentiate between types (drug versus hemp) and to say something about geographic origin (Houston et al., 2017; de Oliveira Pereira Ribeiro et al., 2020). Often markers can be multiplexed (Dufresnes et al., 2017; Houston et al., 2017; de Oliveira Pereira Ribeiro et al., 2020), reducing labor and cost.
Thus, genetic markers are useful as forensic tool to give a confirmation whether a sample is Cannabis and to discriminate between hemp and drug type samples. This can otherwise be difficult, especially with seed samples where there is no obvious difference. Also, information about the geographical origin of samples can give valuable information about distribution routes of illegal products.
Sex markers
A mentioned, the karyotype is composed of 9 pairs of autosomes and one pair of sexual chromosomes (X and Y) (Divashuk et al., 2014). Sex determination in dioecious Cannabis is believed to function through a X-to-autosome balance system, where X/A = 1 are female (XX) and X/A = 0.5 are male (XY) rather than by a Y-active system (Ainsworth, 2000; Vyskot and Hobza, 2004). Monoecious hemp cultivars having both male and female flowers on the same plant, have two X chromosomes (Faux et al., 2014; Razumova et al., 2016). Different genetic markers have been developed to sort male and female plants (Mandolino et al., 1999; Mandolino et al., 2002; Törjék et al., 2002; Toth et al., 2020). It seems that the sex determination is somewhat leaky, as the environment, especially photoperiod, hormones and unknown genetic components other than the sex chromosomes also plays a role (Schaffner, 1921; Faux et al., 2014). In female drug-type Cannabis, spontaneous formation of hermaphroditic plants, with both female and male flowers, can be as high as 10% (Punja and Holmes, 2020). This ability of female plants to produce male flowers independent of the presence of the Y chromosome is used in the production of feminized seeds, as female plants can be treated with thiosulfate to produce male flowers (Lubell and Brand, 2018).Go to:
The prerequisites for genome editing
Due to the many uses of Cannabis, genome editing would be a very desirable tool. Not only would we get a deeper insight into the cannabinoid pathway, but also many other genes important for the many uses of Cannabis could be investigated. The successful use of genome editing requires a genome editing tool, sequence information of suitable target genes, introduction of the construct into plant tissue and the ability to regenerate shoots from explant tissue.Gene editing techniques
New Breeding Techniques (NBT) have emerged as alternatives to classical plant breeding and conventional transgenesis. These new techniques facilitate development of novel varieties more precisely and faster than by classical breeding giving genome modifications indistinguishable from those introduced by conventional breeding and chemical or physical mutagenesis (Lusser et al., 2012). NBT include the sequence-specific nuclease (SSN) tools such as Zinc Finger Nucleases (ZNF´s) (Petolino, 2015), Transcription Activator-Like Effector Nucleases (TALENs) (Khan et al., 2017) and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) (Chen et al., 2019; Montecillo et al., 2020), all allowing for targeted mutagenesis of candidates without unwanted side mutations.A common feature for ZFNs, TALENs and CRISPR/Cas is the programmability to cleave in specific locations and generate DNA double strand breaks (DSBs) that stimulate standard cellular repair mechanisms including non-homologous end joining (NHJE) and homology-directed repair (HDR) (Voytas, 2013; Gupta et al., 2019). By NHEJ, the repair at the DSB site is often imprecise which leads to introduction of small deletions/insertions at the site of break, resulting in knockout of gene function via frame shift mutations. HDR requires a homologous DNA segment as template to correct or replace existing sequence. By HDR it is thus possible to make specific nucleotide changes.
ZNF´s and TALENs are hybrid proteins created by fusing ZF and TALE DNA-binding domain to the non-specific cleavage domain of FokI endonuclease (Petolino, 2015; Khan et al., 2017). The FokI endonuclease non-specific cleavage domain must dimerize to cleave the DNA target. In August 2013, CRISPR/Cas emerged as an alternative genome editing method in plants (Feng et al., 2013; Li et al., 2013; Nekrasov et al., 2013; Shan et al., 2013; Xie and Yang, 2013). The CRISPR method was originally discovered as an antiviral defense system widespread in prokaryotes (Wiedenheft et al., 2012). The system is based on a Cas9 nuclease which can be targeted to a specific genomic sequence by an easily engineered single guide RNA (sgRNA) of 20 base pair (bp). A protospacer adjacent motif (PAM) is needed adjacent to the 3’ end of the 20 bp target. Originally, the purpose of the PAM sequence was to distinguish self from non-self in prokaryotes.
The CRISPR/Cas technology has become the preferred method for making targeted mutations in plants without undesired side mutations, due to ease of use, precision, efficiency, and low cost (Shan et al., 2013; Kumar et al., 2020), and since first reported a long range of rapports on modifications in crops have been reported in multiple plant species (Gupta et al., 2019). Ease of multiplexing, i.e., the simultaneous targeting if several genes with a single molecular construct, is another major advantage of CRISPR/Cas9 technology compared to ZFN and TALEN (Shan et al., 2013; Lowder et al., 2016; Ma et al., 2016; Čermák et al., 2017; Kumar et al., 2020). Although many report the use of CRISPR techniques in the coding sequence of genes, they can be used in promoters and upstream open reading frames as well (Holme et al., 2017; Rodríguez-Leal et al., 2017; Si et al., 2020). Recently DNA editing in plant plastics has also become a possibility (Kang et al., 2021).
The technology is quickly developing (Zhu et al., 2020), and new CRISPR nucleases like Cas12a creating 5´overhangs or nucleases having different PAM recognition sites are constantly expanding the perspective (Jaganathan et al., 2018; Swarts and Jinek, 2018). Very recently, PAM-less CRISPR systems are emerging (Ren et al., 2021). Nucleases that only make a single-strand break (nickases) can be used in pairs, each requiring a sgRNA. By positioning the two nicks close to each other on opposite strands, a break is created. As two sgRNAs are required, this paired nicking dramatically increases the specificity and thus reduces off-targeting in unwanted places. HDR is still challenging in plants and several developments in the CRISPR techniques have been developed to overcome this problem. Adenine base editors (ABEs) changing adenine (A) to guanine (G) and cytosine base editors (CBEs) changing cytosine (C) to thymine (T) are now working in plants (Zong et al., 2018; Hua et al., 2020). A new technique for editing is the prime editing technique, where bases in the target site is edited based on the sequence of a prime editing guide RNA (Lin et al., 2020; Zhu et al., 2020; Zong et al., 2022). Further, multifunctional genome editing systems are now emerging, making it possible to do both base editing and knockout simultaneous using a single construct (Li et al., 2020). On top of local changes such as minor deletions/insertions and base editing, the introduction of bigger structural variations are now also possible (Lu et al., 2021). Some new techniques are firstly developed for monocots and optimization might be needed to use them in dicots such as Cannabis.
Online tools are available to guide the design of efficient sgRNAs. Five different sgRNA designing tools and their main characteristics have been reviewed by Hesami et al. (2021a). The algorithms in such programs are developed based on the assessment of many thousands of gRNAs targeting genes. However, most tools are not developed based on plant data and the predicted efficiency is not always in accordance with the found results (Pauwels et al., 2018; Naim et al., 2020). An updated tool based on plant data is needed to increase the efficiency of plant sgRNAs.
Status of available sequence data
There is now a reference genome for Cannabis, which can be found at NCBI ( Supplementary Table S1 ). This reference genome, called cs10, is made from female material in the CBD-high isolate CBDDRx-18 (Grassa et al., 2021). On top of the reference genome, NCBI lists thirteen different Genbank accessions of genome assemblies, five of which are at chromosome level ( Supplementary Table S1 ). These thirteen assemblies mostly represent female plants but are made from different types of Cannabis (TDC high, CBD high, mixed profile and hemp), making them a valuable tool for finding sequence data for potential candidate genes. As Cannabis is highly heterozygous, not least at the THCAS and CBCAS gene loci, the creation of a Cannabis pangenome is in high demand (Hurgobin et al., 2021). Six different transcriptome assemblies from hemp and medical Cannabis are also available from NCBI and the Cannabis Genome Browser ( Supplementary Table S2 ). On top of this, very many sequences (Nucleotide, WGS, RNA-seq, Nanopore and Targeted amplicon sequences form the Phylos Bioscience/Open Cannabis Project) can be blasted from the NCBI homepage, if the gene of interest should not appear in the genome assemblies. Reference genomes and other assemblies for both the chloroplast and mitochondrial genomes are also available ( Supplementary Table S3 ).It must be stressed that for gene editing techniques, the precise genetic sequence of the cultivar at hand is needed in order to design guides. This means that both alleles of each candidate gene to be targeted must be sequenced. Further, the availability of genomic sequence information not only provide the candidate genes for targeting but also gives the opportunity to analyze for possible off-targets, not only in gene families with high sequence similarity but also unexpected off-targets in unrelated genome regions. However, a very accurate screening for off-targets might be difficult in the highly heterozygous Cannabis genome.
Tissue culture and plant regeneration
Micropropagation
The plant material for production of medical Cannabis is obtained from cuttings from mother plants. The maintenance of mother plants demands a lot of space and considerable effort to keep the material free from diseases. Further, there is a need to store valuable breeding material. Propagation and maintenance of material via in vitro culture would be a way to solve this issue and tissue culture has been a topic in several papers. Several papers have reported methods for in vitro propagation in Cannabis, methods that often are described as regeneration (Table 1) (Lata et al., 2016; Piunno et al., 2019; Smýkalová et al., 2019; Ioannidis et al., 2020; Wróbel et al., 2022). However, most papers do not describe regeneration from a single non-differentiated cell but instead report shoot formation from pre-existing meristems, once the apical dominance is broken. Summaries of published micropropagation studies were recently published (Hesami et al., 2021a; Monthony et al., 2021c). Readers with special interest in micro propagation and/or preservation are referred to these papers.Table 1
List of Cannabis sativa studies reporting micropropagation from pre-existing meristems.Type of explant | Genotype (Type) | Number of shoots obtained | References |
|---|---|---|---|
Nodal segments | MX-1 (drug) | 13.8 shoots/explant | |
Shoot tips | Changtu (fiber) | 3.22 shoots/shoot tip | |
Nodal segments | Mexican variety (drug, THC rich) | 13.44 shoots/explant | |
Immature and mature floral explants | 1KG2TF (drug, THC rich) | 4a shoots/immature inflorescence | |
S1525 (drug, THC rich) | < 1a shoot/immature inflorescence | ||
Isolated meristem | USO-31 (fiber, < 3% CBD) | 4.4 shoots/explant | |
Shoot apex | 3.2 shoots/explant | ||
Cotyledonary node | 2.4 shoots/explant | ||
Nodal segments | High CBD variety | 3.63 shoots/explant | |
High CBG variety | 3.38 shoots/explant | ||
Nodal segments | MX-CBD-11 (drug, CBD rich) | 3.00 shoots/explant | |
MX-CBD-707 (drug, CBD rich) | 2.43 shoots/explant | ||
Shoot tips of epicotyl | Diana | 3.4 shoots/explant | |
Fedora 17 | 3.2 shoots/explant | ||
Finola (all hemp) | 3.7 shoots/explant | ||
2 cm stem tips | Wife (hemp) | 8.4 micro-cuttings/4 explants | |
Meristems | Pure CBD | 1.9 shoots/explant | |
Nodal segments | Cheesequake | 0.5 shoots/explant | |
| Moby Dick | 1.9 shoots/explant | |
| Space Queen | 0.2 shoots/explant | |
| Pennywise (all drug type) | 2.0 shoots/explant | |
| BLD | 0.4 shoots/explant | |
| SWD | 0.4 shoots/explant | |
| Moby Dick (all drug type) | 0.3 shoots/explant | |
Single floret | U82 (drug, THC rich) | 18.2 shoots/explant | |
Pair of florets | 14.7 shoots/explant | ||
Shoot tip | US Nursery Cherry I (drug) | 5.75 shoots/explant, over 4 cycles | |
Two-node explants | BA-21 (drug, code name) | 2.23 shoots/explant | |
BA-41 (drug, code name) | |||
BA-49 (drug, code name) | |||
BA-61 (drug, code name) | |||
BA-71 (drug, code name) | |||
Tip cuttings | Epsilon 68 (fiber, CBD rich) | 2.5 shoots/explant | |
Nodal cuttings | 1.3 shoot/explant | ||
Secondary tip and nodal cuttings | 3 shoots/explant | ||
Microshoots | Abacus (hemp) | 2.6 shoots/explant | |
Wife (hemp) | 3.7 shoots/explant | ||
Stem segments with two nodes | Honey Banana (THC-rich) | 1.5 shoot/explant | |
1-cm single-node stem segment | TJ’s CBD (CBD-rich) | >20a shoots/explant (TDZ, low quality) | |
8a shoots/explant (BA, high quality) | |||
Shoot segments with one node | Safari Punch (THC-dominant) | 5.33 shoots/explant | |
Peanut Sundae (THC-dominant) | 2a shoots/explant | ||
Master Hemp (CBD-dominant) | 5.4 shoots/explant | ||
Orange Mimosa Purple (THC rich) | 2.4a shoots/explant | ||
Golden Papaya (THC-dominant) | 3.33 shoots/explant |
Only genotypes from which shoots were obtained are included. a number estimated from figure.
In general, finding the right growth medium seems to be very cultivar dependent (Grulichova et al., 2017; Codesido et al., 2020; Stephen et al., 2023). This makes it difficult to compare studies using different combinations of cultivars and media. It remains to be uncovered if this is due to a very limited number of plants being very willing to respond in vitro, or whether the ideal medium composition still needs to be discovered. This cultivar dependence implies that the use of hemp as a proxy for medicinal type Cannabis may not be successful (Page et al., 2021). Although there might not be a big difference in multiplication rate between fiber and drug types (Table 1). The results might also be dependent on whether the starting material is taken directly from the greenhouse or from tissue that has been in tissue culture for some time. The position (basal versus apical) of the stem explant also seems to affect multiplication rates (Hesami et al., 2023). There could be a lingering effect from plant growth regulators found in plants with roots that might influence the multiplication rate (Page et al., 2021). A high number of shoot proliferation has been reported in some cases (Lata et al., 2009a; Lata et al., 2016) but in most cases the number of shoots per explant is only between 2 and 3 (Table 1). The use of floral reversion might be a way to move forward, as this method increased the multiplication rate up to eightfold (Piunno et al., 2019; Monthony et al., 2021a). It should be noted that achieving the highest multiplication rate might give lower quality and lower rooting ability (Stephen et al., 2023). Rooting is very important for successful micropropagation and has been a topic in several papers (e.g.: Zarei et al., 2021; Ioannidis et al., 2022a; Kurtz et al., 2022; Stephen et al., 2023).
There is a general need for improvement in more cultivars, if micropropagation should be of general use. Scientific research can be successful, even though a very limited (or only one) number of plant cultivars can be used. However, in production, medical Cannabis growers need to be able to use the technique in all their material before they invest in tissue culture facilities. It is most probable that several companies already have developed successful protocols for micropropagation. Most of these are, however, kept as trade secrets, if not funded by public means (Adhikary et al., 2021; Zarei et al., 2023). Resent papers show that improvement of micropropagation is still an interest also in universities (Borbas et al., 2023; Hesami et al., 2023; Stephen et al., 2023) and new methods, such as the use of bioreactors (Rico et al., 2022), photosynthetic proficiency measurements (Pepe et al., 2022) and photoautotrophic micropropagation (Zarei et al., 2021) have been investigated.
Micropropagation using synthetic seeds has been investigated as an alternative solution for propagation and conservation of germplasm. The use of synthetic seeds in Cannabis was first reported by Lata et al. (2009b; Lata et al., 2012) using the cultivar MX. Recently, a paper on commercial scale synthetic seed production using the elite cultivar ‘Slurricane’ was published (Zarei et al., 2022). The developed method was very successful, as a regrowth rate of 100% was seen after storage for 150 days. Cryopreservation has also been investigated as a means for long term storage on in vitro material (Lata et al., 2019; Downey et al., 2021). Although these methods are not of immediate importance for genome editing, they represent valuable ways of storing high-value material such as modified cultivars.
Plant regeneration
In vitro propagation from pre-existing meristems is very useful for multiplying material for medical Cannabis production. However, if regeneration from single cells is optimized, a much higher multiplication rate might be obtained. Further, to produce CRISPR/Cas mutated plants, an efficient protocol for de novo regeneration of plants from single cells is needed to avoid chimeric plants. In Cannabis, such de novo regeneration seems very difficult to obtain from callus or tissue without preformed meristems. This recalcitrance to regeneration is the main obstacle to an efficient genome editing protocol in Cannabis (Monthony et al., 2021b).Recalcitrance is a common problem in tissue culture (Altpeter et al., 2016). For years, many different combinations of explants and plant growth regulators have been used to try to solve the difficulty of regenerating plants from very many species, often without great success. The ability to regenerate seems to be not only species dependent but also cultivar dependent. The recalcitrance might be linked to a very high degree of apical dominance and/or difficulties in cellular reprogramming of already differentiated cells (Sugimoto et al., 2019), making the generation of shoots difficult. This calls for further research into whether there is a general explanation for recalcitrance to regenerate across plant species.
Testing many different combinations of explant type, explant age, type of gelling agent, type of carbohydrate source, type, and balance of PGRs and addition of other supplements such as Zn or polyamines is often tedious and time consuming, sometimes with a low success rate. This process might be optimized using the ability of machine learning to discover non-linear relationships and concealed interactions (García-Pérez et al., 2020). Machine learning has already been used in Cannabis to optimize in vitro seed germination (Hesami et al., 2021b; Pepe et al., 2021a; Aasim et al., 2022) and to study in vitro shoot growth and development (Pepe et al., 2021b) and callus morphology (Hesami and Jones, 2021). Further, as many research projects are performed by PhD students and post docs, with a strong demand for an outcome of scientific papers, the focus is often turned away from comprehensive, long-term research aiming at optimizing regeneration protocols. There might also be a lack of reports showing negative results. All this might have slowed down the progress of regeneration.
A direct comparison between experiments is sometimes difficult as results are given as responding explant % or number of shoots per shooting explant (Table 2). Although the lowest percentage of responding explants is reported in hemp (Slusarkiewicz-Jarzina et al., 2005), there is not a clear trend for a difference between hemp and drug type cultivars. The biggest difference can be explained by the type of explants used. Experiments using hypocotyl, stem, or stem nodes have a higher response rate in general (Table 2) (Wielgus et al., 2008; Galán-Ávila et al., 2020; Önol and Yildirim, 2021; Galán-Ávila et al., 2021b).
Table 2
List of Cannabis sativa studies reporting regeneration experiments without transformation.Type of explant | Genotype | Type | Callus stage | Best outcome | References | |
|---|---|---|---|---|---|---|
Responding explants (%) | No. of shoots per explant | |||||
Axillary bud Petiole Internode | Fibrimon-24, Silesia, Novosadska, Fedrina-74 Juso-15 | Hemp Hemp Hemp | Yes Yes Yes | 2.3 2.5 1.5 | | |
Stem Cotyledon | Bialobrzeskie, Beniko, Silesia Bialobrzeskie, Beniko, Silesia | Hemp Hemp | Yes Yes | 14 6 | | |
Young leaf | MX | Drug | Yes | 96.6 | 12.3 | |
Epicotyl Cotyledon | Iranian Cannabis | Unknown | Yes Yes | | 2 1 | |
Cotyledon | Kunming, Neimeng 700, YM535, Anhui727, DaliA1, Heilongjiang698, Heilongjiang449 BM2 | Hemp Hemp Seed | Yes | 54.8 | 3.0 | |
Hypocotyl Cotyledons Leaf | Ferimon, Felina32, Fedora17, USO31, Finola Ferimon, Felina32, Fedora17, USO31, Finola Ferimon, Felina32, Fedora17, USO31, Finola | Hemp Hemp Hemp | No No No | 71.15 9.29 average 0.42 | 1.72 1.42 - | |
Hypocotyl Cotyledons | Ferimon, Felina32, Fedora17, USO31, Finola, Futura75 Ferimon, Felina32, Fedora17, USO31, Finola, Futura75 | Hemp Hemp | No No | 76.5 26.3 | 1.6 2.0 | |
Leaf segments | UP305 | Drug | Yes | 18 | | |
Stem nodes | Samsun Vezirköprü population | Drug | Yes | 75 | 4.593 | |
True leaves Cotyledon Hypocotyl Embryo hypocotyls of immature grains | YUNMA7 One hundred Cannabis varieties | Hemp Hemp | Yes Yes Yes Yes | 2.27 1.78 1.41 7 | | |
Stem | H-CBD variety H-CBG variety | Drug Drug | Yes Yes | 62 | |
One experiment, using leaf explants, stands out, as almost all explants gave shoots, with an average of 12.3 shoots per callus (Lata et al., 2010). This study has been replicated using ten other drug type Cannabis genotypes (Monthony et al., 2021b). Here, the experiment failed to induce shoots in all the genotypes tested, making it clear that regeneration might not only be tissue specific but also very dependent on genotype. The importance of genotype for regeneration in Cannabis is stressed by the fact that Zhang et al. found a regeneration rate varying from 0 to 7% when screening one hundred genotypes (Zhang et al., 2021). Further, the lack of reproducibility stresses the difficulty of transferring tissue culture methods to other laboratories.
Recently, Galán-Ávila et al. published two papers showing a very high percentage of direct regeneration without a callus phase from hypocotyls (Table 2) (Galán-Ávila et al., 2020; Galán-Ávila et al., 2021b). These results are very promising but remains to be seen whether this method can be transferred to medical Cannabis.
Transformation
Transformation in Cannabis has been a research topic for more than 20 years. Three main transformation techniques have been used, the transformation with Agrobacterium rhizogenes to get hairy roots, transient transformation, and stable transformation. The status of transformation in Cannabis has also been reviewed by others (Feeney and Punja, 2017; Simiyu et al., 2022). For an in-depth discussion of Agrobacterium strains, promoters and selection markers, readers are referred to Hesami et al. (2021a).Hairy root cultures often have an enhanced ability to synthesize secondary metabolites (Srivastava and Srivastava, 2007). Hairy root cultures were established after transformation with A. rhizogenes in hemp as well as drug-type Cannabis (Wahby et al., 2013; Wahby et al., 2017). Several types of media containing a range of different combinations of hormones were tried, but although callus developed from the hairy root cultures, no shoots were obtained (Wahby et al., 2017). No cannabinoids were present in the hairy root cultures. Similarly, no cannabinoid production was found in cell suspension cultures (Flores-Sanchez et al., 2009). Contrary, hairy root cultures developed from callus without the use of A. rhizogenes produced a very low level of cannabinoids (Farag and Kayser, 2015). The level of cannabinoids might be dependent on the variety of plant and/or of the plant variety-bacterial stain combination. However, higher levels would probably be toxic to the cultures. The ability of callus cultures to form roots was also seen by Feeney and Punja (2003). Unfortunately, regeneration of plants from hairy roots, although possible in some species (Crane et al., 2006; Lütken et al., 2012; de la Torre et al., 2018), is often quite challenging and has not yet been reported in Cannabis.
Transformation using Agrobacterium tumefaciens is often used in plants, both for transient and stable transformation (Dunwell and Wetten, 2012; Krenek et al., 2015). Studies with wild-type A. tumefaciens (MacKinnon et al., 2001; Wahby et al., 2013) as well as recent papers (Tables 3, 4) (Galán-Ávila et al., 2021b; Zhang et al., 2021) show that genetic transformation of Cannabis is possible. However, there seems to be a cultivar difference in the susceptibility to A. tumefaciens. As the infection with Agrobacterium might be considered as a pathogen attack by the plant and the secondary metabolites is known to protect Cannabis against pathogens (McPartland, 1984; Wanas et al., 2016), the difference in susceptibility might be explained by a difference in the secondary metabolite profile (Sorokin et al., 2020). This might partly explain why all stable transformations in Cannabis is done in hemp cultivars (see below; Table 4).
Table 3
List of Cannabis sativa studies reporting transient transformation.Type of explant | Method | Genotype | Gene of interest | References |
|---|---|---|---|---|
Part of leaf Small plants | Agroinfiltration | Unknown | EGL3 | |
Cotyledons Leaves | Agroinfiltration | Finola (hemp) | PDS (VIGS) Chl1 (VIGS) | |
Various tissue incl. leaves, male and female flowers | Agroinfiltration | CRS-1; CFX-2; Fedora 17; Felina 32; Ferimon; Futura 75; Santhica 27; Uso31 All hemp | pEarlyGate101-uidA (GUS) PDS (RNAi) | |
Intact seedlings | Agroinfiltration | Nightingale Green Crack CBD Holy Grail x CD-1 All drug type | pCAMBIA1301 with uidA (GUS) | |
Leaves | Vacuum infiltration with gold nanoparticles | Tygra (THC low) | GmMYB29A2 GmNAC42-1 | |
Leaves | Protoplasts/PEG | Cherry x Otto II: Sweetened CDB high; THC low | pBeaconGFP_GR-GUS pEVTV_DR5 pBeaconRFP_GUS | |
Leaf segments | Agroinfiltration | Cannbio-2 (THC : CBD ratio 1:1.8) | pRNAi-GG-THCAS pRNAi-GG-CBDAS pRNAi-GG-CBCAS pRNAi-GG-CBDAS-UNIVERSAL | |
Leaves | Protoplasts/PEG | THC high genotype | GFP | |
Leaves | Protoplasts/PEG | Abacus (CBD rich) | CsCBAS : GFP CsCBDAS : GFP CsTHCAS : GFP | |
Cotyledons | Protoplasts/PEG | Blueberry Divine (THC : CBD ratio: 20:1) CAN 40 (6:5) CAN 21 (3:100) Charlotte’s Web (85:1) Mantanuska Divine (3:2) Divine (43:100) Lemon Divine (12:5) CAN 20 (89:1) Yunma No. 1 (hemp) | CsMYC2 |
Table 4
List of Cannabis sativa studies reporting stable transformation.Type of explant | Method | Genotype | Transformation | Gene of interest | Regeneration | References |
|---|---|---|---|---|---|---|
Hypocotyl | Agrobacterium rhizogenes | CAN0111 (drug) CAN0221 (drug) Futura77 (hemp) Delta105 (hemp) Delta-llosa (hemp) | Stable (Hairy roots) | rol genes | No | |
Seedlings | Agrobacterium tumefaciens | CAN0111 (drug) CAN0221 (drug) Futura77 (hemp) Delta105 (hemp) Delta-llosa (hemp) | Tumor induction | Wild type A. tumefaciens | No | |
Suspension culture based on stem and leaf from seedlings | A. tumefaciens | Anka (hemp) | Stable | pNOV3635 containing PMI | No | |
Shoot tip | A. tumefaciens | Felina 34 (hemp) Fedora 19 (hemp) | Stable | PGIP | Yes | |
Hypocotyl | A. tumefaciens | Medical Cannabis | Stable | Fluorescent expressed proteins | Yes | |
Hypocotyl Cotyledon Meristem | A. tumefaciens | Futura75 (hemp) Ferimon (hemp) USO31 (hemp) USO31 (hemp) USO31 (hemp) | Stable | pBIN19 with uidA (GUS) | Yes, direct regeneration | |
Immature embryo hypocotyls | A. tumefaciens | DMG278 (hemp) | Stable | pG41sg with CsGRF3-CsDIF chimera and CRISPR/Cas9 guide | Yes |
Most probably, the recalcitrance in Cannabis explants is also due to the developmental state of the explants. In many plants, the first choice of explant material for transformation would be very young tissue, like that obtained from young seedlings. Such material is easily obtained from hemp, where seeds are available in big amounts. In medical Cannabis, however, very specific combinations of cannabinoids and terpenes might be lost if seeds must be produced. A method where the meristems of medical plants could be the starting material, is therefore highly adventitious. Recent reports show transformation on existing meristems, in vitro or in planta is possible (Galán-Ávila et al., 2021b; Pandey et al., 2022). Further, developmental regulators can be used to induce new meristems from somatic cells during the transformation process (Maher et al., 2020). One should be aware that the plants obtained from these meristematic techniques might have a higher degree of mosaic tissue than plantlets obtained by regeneration via callus.
Within the last six years several papers report transient transformation in Cannabis using not only reporter genes such as GUS or GFP, but also the down regulation of genes using virus induced gene silencing (VIGS) or RNAi (Table 3). A study from 2013 (Wahby et al., 2013) showed that both hemp and drug type Cannabis is susceptible to wild type A. tumefaciens infection and it is thus not surprising that the most frequently used method for transient transformation is agroinfiltration by vacuum or by using a needleless syringe. A patent by Roscow JR. (2017) describes transient methods to transform Cannabis by vacuum infiltration or by dipping the green parts into an Agrobacterium soup where after vacuum is applied. The treated plant parts were producing trichomes comprising secondary compounds on non-flowering parts of the plant. It is, however, unclear if this property was inherited to the next generation. Transient transformation using agroinfiltration is also reported by several others (Schachtsiek et al., 2019; Deguchi et al., 2020; Sorokin et al., 2020; Matchett-Oates et al., 2021b). Results show that the recalcitrance to be transformed might be due to the plants ability to protect itself against pathogen attack, as the addition of ascorbic acid, scavenging excess ROS, had a positive effect of the transformation efficiency (Deguchi et al., 2020). Other methods for transient transformation include vacuum infiltration of DNA coated gold nanoparticles (Ahmed et al., 2021) and transformation of protoplasts using PEG (Beard et al., 2021; Matchett-Oates et al., 2021a; Kim et al., 2022; Zhu et al., 2022).
Transient transformation, although not leading to stably transformed plants, is a very useful tool for overexpression and silencing studies of many genes. Valuable information about the interaction between Cannabis and Agrobacterium which might be used to improve stable transformation. It seems that transient transformation is possible in both hemp and drug-type material (Deguchi et al., 2020; Sorokin et al., 2020; Matchett-Oates et al., 2021b), which gives the hope that stable transformation will also be possible in medical Cannabis.
Stable transformation is likely needed for genome editing of Cannabis. The first successful stable transformation of hemp was reported by MacKinnon et al. (2001) in the Scottish Crop Research Institute Annual Report. The report gives very little information about the methods used and the transformation efficiency obtained. Hemp suspension culture cells were transformed by Feeney and Punja in 2003 (Feeney and Punja, 2003). Although showing a transformation rate up to 55%, no plant regeneration was obtained. After these two 20-year-old papers, stable transformation was not reported for almost 15 years, most probably reflecting the lack of success of regenerating transformants.
A patent filed by Sirkowski (2012) describes a method for Agrobacterium-mediated transformation of medical Cannabis. The material used is sections of hypocotyl and plants are regenerated from the tissue, but the efficiency is not mentioned. It is not clear in which genotypes the regeneration was successful and if plants were regenerated directly via a callus phase.
Very recently, two groups have been able to stably transform hemp (Galán-Ávila et al., 2020; Zhang et al., 2021) (Table 4). In the method developed by Galán-Ávila et al. (2021b) shoots are regenerated directly from hypocotyl, cotyledon, or meristems without a callus phase. This transformation system is very fast as tissue could be analyzed for GUS already one month after transformation. Both genotypic and explant differences were observed, with the least genotype dependency and the highest transformation rate found using hypocotyls. This method seems very promising, but the use of hypocotyls might be hampering the transferability to medical Cannabis that is usually propagated using cuttings. However, there was a low transformation rate using meristems as one transformant from one genotype was obtained from this material.
The first paper describing the use of genome editing in Cannabis was published in 2021 (Zhang et al., 2021). Using immature embryo hypocotyls from hemp as a starting material, shoots were regenerated from callus. The phytoene desaturase gene was knocked out using CRISPR/Cas9, giving an albino phenotype. Zhang et al. used a recently developed method, where co-transformation with a GRF-GIF chimeric protein showed a substantially increased efficiency and speed on regeneration, also in recalcitrant genotypes (Debernardi et al., 2020). This was also useful in Cannabis, as overexpression of the developmental regulator chimera CsGRF3-CsGIF1 almost doubled the regeneration rate (Zhang et al., 2021).
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Genome editing in Cannabis - challenges and possibilities
During the last 5-10 years there has been a lot of progress in the prerequisites for genome editing in medical Cannabis. There is now a reference genome for Cannabis and a lot of additional sequence data available. This is a very important basis for the development of sgRNAs for different genome editing techniques. Not only can sequence for candidate genes be found, but also analyses for potential off-targets can be made. The editing techniques are in rapid development with new techniques and improvements emerging every year. The biggest leap forward is the recent reports of regeneration and Agrobacterium-mediated transformation of Cannabis. There is, however, still challenges when it comes to using genome editing in medical Cannabis. The two main challenges are genotype dependency and the selection of transformable explant material from cuttings.As seen in recent experiments, very young hemp tissue can, although maybe not easily, be transformed and regenerated into plants (Galán-Ávila et al., 2021b; Zhang et al., 2021). There is without doubt genotype dependency, not only between chemotypes but also between hemp cultivars. The use of CsGRF3-CsGIF1 in Cannabis and the use of a WUSCHEL family gene in wheat, T. monococcum, triticale, barley, and maize are examples where developmental regulators can overcome at least some of the genotype dependency (Zhang et al., 2021; Wang et al., 2022). It is our belief that the future will bring more improvements and refinements as recalcitrance to regeneration and genotype dependency is found in several plant species.
Using hypocotyls from immature embryos for transformation in medical Cannabis is not the obvious choice. The plants are usually clonal propagated to maintain valuable cannabinoid and terpene profiles, which will be changed if plants are propagated by seeds. Recently, promising results showing regeneration from drug type Cannabis using leaf segments and stem nodes have emerged (Önol and Yildirim, 2021; Hesami and Jones, 2021). Methods avoiding young material from seeds also include transformation on existing meristems (Galán-Ávila et al., 2021b) and the induction of new meristems from somatic cells (Maher et al., 2020). All these methods need to be thoroughly investigated in many genotypes of medical Cannabis. The possible outcome of the combination of floral reversion and transformation should also be pursued.
Due to the multiple applications of Cannabis, many traits might be interesting to improve. Single gene traits are easier to work with than very complex traits. However, successful editing of several genes is reported in other species (Gao et al., 2017; Mercx et al., 2017; Morineau et al., 2017) and might also be feasible in medical Cannabis as soon as a versatile transformation platform is established.
Clean cannabinoid products can be obtained by producing them in other systems like yeast (Luo et al., 2019). However, the therapeutic response is often higher using plant products, probably due to a synergistic or entourage effect between various cannabinoids or between cannabinoids and terpenes (Ferber et al., 2020). Genome editing tools would be very useful to study and manipulate the biosynthetic pathways of cannabinoids and terpenes, not only for pure scientific purposes, but also to improve the products in the medical Cannabis industry. Gene editing facilitates gene knockout studies as well as studies altering gene expression levels and tailoring of specific genes. The review by Hesami et al. (2022) lists several ideas for the use of CRISPR-based methods for optimizing cannabinoid production using in vitro culture and heterologous systems.
The THCA and CBDA synthases are of special interest, as they are responsible for the synthesis of the two main cannabinoids, THC acid and CBD acid from the common precursor, CBGA. The sequences of these synthases are very similar, and studies have shown that they are positioned at two closely linked loci in a very complex region (Van Bakel et al., 2011; Laverty et al., 2019; Vergara et al., 2019). This complexity makes it challenging, although not impossible, to make changes using genome editing, as guides need to be designed to hit target genes without off-target effects.
As THC is psychoactive, there is a demand for plants completely free of THC. It is essential that drug formulations contain as low a THC content as possible as the THC contamination causes short- and long-term side effects (Volkow et al., 2014). The use of extra purified CBD or synthetic CBD instead of the plant extract results in a lack of other naturally occurring cannabinoids and bioactive compounds such as terpenes involved in the entourage effect. This may have a decisive influence on the therapeutic effect of the product (Russo, 2019). However, Cannabis varieties bred for high CBD content always contain small amounts of THC.
The hemp cultivar Finola has no THCA synthase (Laverty et al., 2019), but still a small amount of THCA is produced (Pavlovic et al., 2019). This presence of THC in CBD-varieties is due to a promiscuous CBDA synthase producing up to 5% THCA (Zirpel et al., 2018). In yeast model systems, site-directed mutagenesis has been performed in THCAS and CBDAS to investigate the importance of amino acids for activity and specificity. One amino acid change at A414V increased the catalytic activity 3.3-fold and caused a shift in specificity profile from CBDA to THCA production (Zirpel et al., 2018). Further studies are needed to uncover the potential of modulating the specificity of this enzyme in planta. CRISPR technology would be the obvious choice for inducing base editing in the CBDA synthase and modulate enzyme activity towards making the synthase completely specific for CBDA production.
Another need is to produce plants with a higher content of rare cannabinoids or to change the content of different terpenes independent of the cannabinoid profile. CBG is a compound having medical properties of its own, but it is often present in quite low levels. Knocking out both THCA and CBDA synthases by genome editing would result in a plant with a higher level of CBG.
Genome editing approaches have been used to obtain resistance against plant diseases caused by viruses, fungi, and bacteria (Borrelli et al., 2018), as inactivation of susceptibility genes often gives resistance. This is highly relevant in medical Cannabis production as the loss of production batches due to attack by fungal diseases is a serious problem. The plants cannot be treated with fungicides as traces of these compounds might be found in the final product. Controlling the humidity is highly energy demanding, but if not done, production batches might be lost.
Amino acid changes in the Mlo gene(s) are known to give resistance against powdery mildew in a range of plants (Kusch and Panstruga, 2017). In medical Cannabis, where the use of pesticides is not possible, the growth of resistant plants is highly desirable. When medical Cannabis is produced in greenhouses, there is a high humidity, which is the perfect environment for the development of the fungal disease powdery mildew. CRISPR-mediated changes in the Mlo gene would give resistance against powdery mildew without any site effects in the cannabinoid production. Pleiotropic effects might occur when the Mlo gene is mutated (Jørgensen, 1992). Whereas some Mlo mutations seem to be without or with only minor pleiotropic effects, TALEN-derived mlo wheat plants with the triple knockout mutations show strong chlorotic symptoms (Jørgensen, 1992; Acevedo-Garcia et al., 2017). This suggests that carefully selected base editing might be preferred over CRISPR/Cas-mediated knockout.
Grey mold due to the fungus Botrytis cinerea is a severe problem in indoor Cannabis production. Botrytis is a necrotrophic fungal pathogen, but it apparently starts its infection in a biotrophic manner (Veloso and van Kan, 2018). Rather than indiscriminately killing its host, Botrytis gently guides the host plant towards committing suicide through apoptosis, making the fungus able to colonize and digest the plant tissue. If the spore density is low, the infected plants might be without symptoms. When these asymptomatic plants approach flowering, the fungus might switch to necrotrophic lifestyle causing the host plant to succumb (Veloso and van Kan, 2018). This might be the reason why growers often see a very sudden, severe attack of grey mold. Although the molecular mechanisms are not fully understood, silencing of susceptibility genes has been shown to impede infection (Sun et al., 2017). This and similar research might lead the way for (some) resistance against Botrytis obtained by genome editing.
There is a strong apical dominance in Cannabis (Smýkalová et al., 2019). Varieties with less apical dominance might be easier to regenerate in tissue culture and would therefore be the obvious candidates for transformation. Removal of apical buds or the application of plant growth regulators such as phytohormones change plant architecture, giving lower and more branched plants (Kocjan Ačko et al., 2019; Burgel et al., 2020). These more uniform plants make harvest of inflorescences easier. Although apical bud removal in hemp gives higher seed yield (Kocjan Ačko et al., 2019), it is unclear whether higher cannabinoid yield will be found in plants with a changed architecture due to genetic changes. However, plants treated with phytohormones showed the same or reduced inflorescence dry weight, dependent on genotype, with no change in CBD content (Burgel et al., 2020). Although drug type Cannabis, due to selection, has become shorter and more densely branched, there is a great demand for varieties with a standardized plant type, not least with same height and branching, as such plants are suitable for automation. Thus, genes involved in apical dominance, branching and plant height would be very interesting candidates for genome editing.
As mentioned in the doubled haploid section, haploid inducer lines can be produced using CRISPR/Cas to knock out the centromere-specific histone H3 (CENH3) (Kelliher et al., 2019). This would be a very useful technique to use in Cannabis, where no successful doubled haploid technique is yet available. With a robust transformation platform in Cannabis, haploid inducer lines obtained with this technique is surely possible. Haploid-inducer lines with a hemp genetic background would be useful in medical Cannabis as well, as the haploids will not contain any parental DNA from the haploid-inducer parent. Once established, the haploid-induces lines can carry a CRISPR/Cas cassette that would give edited haploid offspring without the editing machinery (Wang et al., 2019).
There are several other traits of general interest for Cannabis production, also in hemp cultivars. Flowering time, fiber quality, lower phytic acid content of seeds, and soil remediation properties are obvious candidates for investigation via genome editing (Shiels et al., 2022).
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Conclusion
The very high genetic diversity in Cannabis sativa is a great advantage for conventional breeding. However, conventional breeding through crossing and selection is very time consuming. It requires several rounds of backcrossing and is complicated by the dioecious nature of the plants. Further, the introduction of new traits might compromise the cannabinoid and terpenoid profile of medical Cannabis. Targeted improvements at predetermined positions in the genome by gene editing might mitigate some of these challenges.Cannabis has traditionally been considered a recalcitrant species, in which techniques like genetic transformation and genome editing were very complicated. However, our review providing insight into recent progresses within tissue culture, genetic transformation, gene editing and necessary sequence information on Cannabis sativa indicates that this is not the case anymore. Currently, plant regeneration has been reported not only in hemp but also in a few medical Cannabis cultivars. Regeneration improvements using developmental regulators has facilitated the first report on CRISPR/Cas9 mediated genome editing in hemp. Our study suggests that future efforts could be directed towards development of a robust regeneration protocol for differentiated or meristematic tissue from medical Cannabis and thereby form the basis for future targeted improvements of medical Cannabis.
Genome editing is a great tool for scientific investigations and precision breeding for secondary metabolites such as cannabinoids and terpenes. Expression of genes related to these compounds can be fine-tuned or completely removed by editing promoters and/or genes. Precision breeding further gives the possibilities to add new traits such as disease resistance or changed plant architecture without meddling with a known cannabinoid profile. Conventional methods adding new genetic variation will continue to be a corner stone in breeding but once transformation is a routine tool in Cannabis, there are almost unlimited possibilities to improve a wide range of plant traits. Furthermore, since medical cannabis is often grown under contained facilities, any GM regulatory requirements of genome edited plants will be easier to meet.
Sounds like big promises, but molecular biology is complicated. Wonder how good the medicine will be? Just because you add or subtract genes that control cannabinoids, doesn't mean its going to be the same. There is a lot going on to manufacture these compounds. We still have a lot to learn.
Interesting info on tissue culture and micropropagation. Great article! Thanks!
Interesting info on tissue culture and micropropagation. Great article! Thanks!
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In Silico Identification of MYB and bHLH Families Reveals Candidate Transcription Factors for Secondary Metabolic Pathways in Cannabis sativa L.
1
CREA-Research Centre for Cereal and Industrial Crops, 40128 Bologna, Italy
2
Department of Agriculture, Food, Environment and Forestry, University of Florence, 50144 Firenze, Italy
3
Department of Life Sciences, Centre BIOGEST-SITEIA, University of Modena and Reggio Emilia, 42122 Reggio Emilia, Italy
*
Authors to whom correspondence should be addressed.
Plants 2020, 9(11), 1540; https://doi.org/10.3390/plants9111540
Submission received: 15 October 2020 / Revised: 6 November 2020 / Accepted: 8 November 2020 / Published: 11 November 2020
Figure 7. Chromosomal distribution of TFs and genes involved in flavonoid and cannabinoid pathways. Genomic loci corresponding to CsMYBs and CsbHLHs identified in this work are marked in blue and red, respectively. The position of genes encoding for flavonoid (in green) and cannabinoid (in red) enzymes is indicated by their acronym in capital letters on each chromosome. For the cannabinoid pathway, full names of represented genes are: AAE1, acyl activating enzyme 1; CBDAS, cannabidiolic acid synthase; CMK, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; DXR, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; DXS, 1-deoxyxylulose-5-phosphate synthase; GPPS-l, GPP synthase large subunit; GPPS-s, GPP synthase small subunit; HDR, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; HDS, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; HPL, hydroperoxide lyase; IDI, IPP isomerase; LOX, lipoxygenase; MCT, 4-diphosphocytidyl-methylerythritol 2-phosphate synthase; MDS, 2-C-methyl-D-erythritol 2:4-cyclodiphosphate synthase; OAC, olivetolic acid synthase; OLS, olivetol synthase; PT: prenyltransferase; THCAS-like, inactive Δ9-tetrahydrocannabinolic acid synthase. For the flavonoid pathway, the following are represented: PAL, phenylalanine ammonia-lyase; C4H, trans-cinnamate 4-monooxygenase; DFR, dihydroflavonol 4-reductase; F3′H, flavonoid 3′-monooxygenase; MT, flavonoid 3′5′-methyltransferase; RT, anthocyanidin-3-O-glucoside rhamnosyltransferase; RT-like, anthocyanidin-3-O-glucoside rhamnosyltransferase-like; CHI, chalcone-flavonone isomerase; FLS, flavonol synthase/flavanone 3-hydroxylase; ANS, leucoanthocyanidin dioxygenase; F3′5′H, flavonoid 3′5′-hydroxylase; 4CL2-1/2, 4-coumarate-CoA ligase 1/2; 3GT-1/2, anthocyanidin 3-O-glucoside 2″-O-glucosyltransferase 1/2; CHS, naringenin-chalcone synthase; F3H, flavanone 3-dioxygenase; F3H, flavanone 3-dioxygenase. Positions and full names of the represented genes are listed in Supplementary Tables S3 and S4; full sequences are reported in Supplementary Dataset S5.
Marijuana and the Cannabinoids
Although primarily used today as one of the most prevalent illicit leisure drugs, the use of Cannabis sativa L., commonly referred to as marijuana, for medicinal purposes has been reported for more than 5000 years. Marijuana use has been shown to create numerous health problems, and...
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this list goes on for pages must read...
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Cannabis
Cannabis: Evolution and Ethnobotany is a comprehensive, interdisciplinary exploration of the natural origins and early evolution of this famous plant, highlighting its historic role in the development of human societies. Cannabis has long been prized for the strong and durable fiber in its...
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Plant sounds
In a series of scientific journal articles published between 2013 and 2016, Dr Monica Gagliano of the University of Western Australia extended the science to include plant bioacoustics.
Other Ecologies | Monica Gagliano | Scientific Research
Personal page of evolutionary ecologist and public science communicator Monica Gagliano. I study behaviour, communication, learning, memory and consciousness of non-human others.
www.monicagagliano.com
Plant bioacoustics - Wikipedia
Sound sensors edit Buzz pollination, or sonication, serves as an example of a behavioral response to specific frequencies of vibrations in plants. Some 20000 plants species,[7] including Dodecatheon and Heliamphora have evolved buzz pollination in which they release pollen from anthers only when vibrated at a certain frequency created exclusively by bee flight muscles. The vibrations cause pollen granules to gain kinetic energy and escape from pores in the anthers.[8]
Plants emit audio acoustic emissions between 10–240 Hz as well as ultrasonic acoustic emissions (UAE) within 20–300 kHz. Evidence for plant mechanosensory abilities are shown when roots are subjected to unidirectional 220 Hz sound and subsequently grow in the direction of the vibration source.[6] Using electrograph vibrational detection, structured sound wave emissions were detected along the elongation zone of root tips of corn plants in the form of loud and frequent clicks. When plants are isolated from contact, chemical, and light signal exchange with neighboring plants they are still able to sense their neighbors and detect relatives through alternative mechanisms, among which sound vibrations could play an important role. Furthermore, ultrasonic acoustic emissions (UAE) have been detected in a range of different plants which result from collapsing water columns under high tension.[14] UAE studies show different frequencies of sound emissions based on whether or not drought conditions are present. Whether or not UAE are used by plants as a communication mechanism is not known.[15]
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Cellulose Binding Domain Chitosan Seed Coating
Chitosan seed coatings have been found to themselves increase biomass, impart antimicrobial and antifungal properties, and reduce germination time.
Applying Chitosan to grains and vegetables can boost germination rates, enhance disease resistance in young seeds, promote growth, and increase yields. To prepare, dissolve Chitosan in a 1% to 3% acetic acid solution, then dilute to a 0.5% to 0.01% solution. Coat seeds with this solution before planting.
Diatomaceous Earth in Getting the Bugs out of Seeds
The National Gardening Associationhttps://garden.org › thread › view › Diatomaceous-Earth
By Xeramtheum September 22, 2013 | When I harvest my seeds, before they are catalogued and logged in, I always sprinkle some Diatomaceous Earth in a small container and add the seeds, then shake to distribute the DE among the seeds. This will take care of any bugs that were harvested along with the seeds, as well as any that may hatch out later. |
1$/LB
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Plant sex determination and sex chromosomes
Heredity volume 88, pages94–101 (2002)Cite this articleAbstract
Sex determination systems in plants have evolved many times from hermaphroditic ancestors (including monoecious plants with separate male and female flowers on the same individual), and sex chromosome systems have arisen several times in flowering plant evolution. Consistent with theoretical models for the evolutionary transition from hermaphroditism to monoecy, multiple sex determining genes are involved, including male-sterility and female-sterility factors. The requirement that recombination should be rare between these different loci is probably the chief reason for the genetic degeneration of Y chromosomes. Theories for Y chromosome degeneration are reviewed in the light of recent results from genes on plant sex chromosomes.Population structure of Cannabis accessions.
(A) Geographic distribution (i.e., sampling sites of feral plants or country of origin of landraces and cultivars) of the samples analyzed in this study. Color codes correspond to the four groups obtained in the phylogenetic analysis and shapes indicate domestication types. The two empty red squares symbolize drug-type cultivars obtained from commercial stores located in Europe and the United States. For sample codes, see table S1.
(B) Maximum likelihood phylogenetic tree based on single-nucleotide polymorphisms (SNPs) at fourfold degenerate sites, using H. lupulus as outgroup. Bootstrap values for major clades are shown.
(C) Bayesian model-based clustering analysis with different number of groups (K = 2 to 4). Each vertical bar represents one Cannabis accession, and the x axis shows the four groups. Each color represents one putative ancestral background, and the y axis quantifies ancestry membership.
(D) Nucleotide diversity and population divergence across the four groups. Values in parentheses represent measures of nucleotide diversity () for the group, and values between pairs indicate population divergence (F ST ).
(E) Principal component analysis (PCA) with the first two principal components, based on genome-wide SNP data. Colors correspond to the phylogenetic tree grouping.
Genome Res.-2019-Laverty-146-56.pdf
drive.google.com
- Kaitlin U Laverty, Jake M Stout, Mitchell J Sullivan, Hardik Shah, Navdeep Gill, Larry Holbrook, Gintaras Deikus, Robert Sebra, Timothy R Hughes, Jonathan E Page, Harm van Bakel. A physical and genetic map of Cannabis sativa identifies extensive rearrangement at the THC/CBD acid synthase locus. Genome Research, 2018; gr.242594.118 DOI: 10.1101/gr.242594.118
ba·sal
/ˈbās(ə)l/
adjective
TECHNICAL
- forming or belonging to a bottom layer or base.
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Genetic Drift
Last Updated : 07 Feb, 2024Table of Content
- Genetic Drift Definition
- What is Genetic Drift?
- Types of Genetic Drift
- Genetic Drift Example
- Causes of Genetic Drift
- Mechanisms of Genetic Drift
- Genetic Drift vs Gene Flow
- Genetic drift vs Natural selection
- Impact of Genetic Drift
Genetic Drift Definition
What is Genetic Drift?
Genetic Drift is plays a very an important part in the evolutionary process of evolution. It refers to means the variation in allele frequencies from one generation to the next which happens because of the random sampling of gametes in finite a countable populations. This drift process happens in all types of populations whether small or large.If the population size is small , then it exerts a strong force on the process of evolution through genetic drift. It happens because The reason behind it is that, if the population size is small then the variations are more extreme. But in actuality the change in allele frequency due to genetic drift is unpredictable. The mathematical theory describing this process was developed by Sewell Wright.
Types of Genetic Drift
There are two types of genetic drift namely the Bottleneck Effect and the Founders effect. These can be explained as follows.- Bottleneck Effect: In this effect, the size of the population decreases which is due to competition, predation, or diseases. The frequency of some alleles in a population changes because the organisms carrying them die. Thus, the frequency of other alleles increases because they are the only alleles left. This is observed many times during natural disasters like earthquakes, volcanic eruptions, drought, tsunamis, etc. These natural calamities result in the death of most of the population.
- Founders Effect: In this effect, a new population is found in a new location which happens due to geographical or physical barriers. They grow completely separate from the original population. This newly formed population does not interact as well as mate with the original population which results in new allele frequencies that are different from the original population.
Genetic Drift Example
The examples of Genetic drift are as follows:- Island Populations: Small islands have less population. This can be understood as the small-sized population is positively related to the area thus, as the area of the island is small the population there is more likely to get influenced by genetic drift. This leads to low genetic diversity in the island population.
- Amish Population: The Amish are the endogamous rural population who are experiencing rapid growth. They have a custom of marrying only between members of the same group. Due to this, genetically inherited diseases like Ellis-van Creveld are more concentrated which prevents new genetic variation from entering the population.
- Cheetahs: There is a hypothesis about the population of cheetahs (scientific name Acinonyx jubatus), according to which their population faced a population bottleneck in the recent history. They have been described as a species with low levels of genetic variation.
Causes of Genetic Drift
Unlike natural selection, which operates based totally on the differential health of individuals, genetic drift is pushed with the aid of hazard events. The situations that causes this phenomenon are as follows:- Population Size: Genetic drift is more suggested in smaller populations, the place hazard activities can have a larger have an impact on on allele frequencies due to the confined wide variety of reproducing individuals.
- Random Mating: When mating is no longer based totally on the individuals’ genetic characteristics or fitness, risk performs a large function in allele transmission, probably main to shifts in allele frequencies over generations.
- Migration: Movement of people into or out of a population can introduce new alleles or eliminate current ones, influencing genetic variety through the random nature of migration events.
Mechanisms of Genetic Drift
The mechanisms involved in genetic drift are stated below:- Random Sampling: Genetic drift lies the thought of random sampling all through reproduction. In small populations, hazard activities can have a large have an effect on which persons make a contribution to the subsequent generation. This randomness can lead to the fixation of positive alleles, inflicting them to emerge as normal in the population.
- Allele Fixation and Loss: Genetic go with the flow can end result in the fixation of an allele, which means it will become the solely allele existing at a specific gene locus in the complete population.
Genetic Drift vs Gene Flow
The difference between genetic drift and gene flow are as follows:| Criteria | Genetic Drift | Gene Flow |
|---|---|---|
| Definition | It refers to the random adjustments in allele frequencies within a population over time due to threat events, frequently greater mentioned in smaller populations. | It includes the switch of genetic material between distinct populations via the motion of individuals, influencing the genetic range of each populations. |
| Cause | Caused by using random occasions like bottleneck effects, founder effects, or fluctuations in population size, with no regard to the adaptive fee of alleles. | Results from the migration of men and women between populations, main to the trade of genetic material and doubtlessly introducing new alleles. |
| Effect on Genetic Diversity | Tends to minimize genetic range within a population as certain alleles might also be misplaced or fixed over time due to chance. | Increases genetic variety in populations by using introducing new alleles and stopping isolated populations from diverging. |
| Population Size Impact | More reported in smaller populations where chance activities can have a large influence on allele frequencies. | Typically has a extra tremendous impact in large populations, as the introduction of new genetic material may additionally have a proportionally smaller impact. |
| Adaptive Significance | Occurs randomly and does not necessarily lead to adaptations or improved fitness; it may also result in the fixation of neutral or even deleterious alleles. | Can make contributions to adaptation by means of bringing in really useful alleles or promotion the spread of effective qualities within populations. |
Genetic drift vs Natural selection
The difference between genetic drift and natural selection are as follows:| Criteria | Genetic Drift | Natural Selection |
|---|---|---|
| Mechanism | Involves random modifications in allele frequencies within a population over time due to chance events, without regard to the adaptive value of alleles. | Operates primarily based on the differential survival and reproduction of humans with characteristics that confer higher health in a given environment. |
| Outcome | Results in adjustments to allele frequencies that are not always associated to the adaptive gain of particular traits; can lead to the fixation or loss of alleles by using chance. | Favors qualities that enhance an organism’s survival and reproduction, main to an extend in the frequency of effective alleles and a limit in deleterious ones. |
| Adaptive Significance | Does not always lead to adaptations; can result in the fixation of neutral or even harmful alleles in simple terms by means of chance. | Driven via the adaptive value of traits, promoting the persistence of alleles that enhance an organism’s capability to survive and reproduce in its environment. |
| Selection Pressure | No precise selective pressure; adjustments in allele frequencies show up stochastically. | Imposes a selective pressure that favors certain traits, influencing the frequency of alleles based on their influence on an organism’s fitness. |
| Population Size Impact | More said in smaller populations, the place chance activities can have a extensive influence on allele frequencies. | Effective in populations of all sizes, however its have an impact on may also be greater noticeable in large populations the place selection pressures can act extra constantly over time. |
Impact of Genetic Drift
The consequences on genetic drift are stated below:- Loss of Genetic Diversity: Genetic drift, especially in small populations, frequently leads to a reduction in genetic diversity. As alleles are randomly misplaced or fixed, the standard genetic make up will become much less diverse. This loss of range can compromise a population’s capability to adapt to altering environments and expand its vulnerability to a number of threats.
- Increased Genetic Differentiation: Populations experiencing genetic glide may also diverge from one any other as hazard occasions form their respective allele frequencies. Over time, this can lead to expanded genetic differentiation between populations. The founder effect, in particular, contributes to the institution of wonderful genetic profiles in isolated populations.
- Fixation of Deleterious Alleles: Small populations are extra inclined to the fixation of deleterious alleles, which may also have poor consequences on man or woman fitness.
Conclusion – Genetic Drift
In conclusion, understanding the mechanisms and consequences of genetic drift is important, alongside with the related keywords. Each allele and gene play an important role and function for their working. It should be noted, that it should not be disturbed or altered unnecessary this what genetic drift is all about. If natural selection occurs than all the changes in a gene should be done in a balanced style, this is what a healthy state of body is.
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Yup AE77 Orange Skunk cut S1s if memory is correct
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SNP in Potentially Defunct Tetrahydrocannabinolic Acid Synthase Is a Marker for Cannabigerolic Acid Dominance in Cannabis sativa L.
byAndrea R. Garfinkel
Matthew Otten
and
Seth Crawford
Oregon CBD, Independence, OR 97351, USA
*
Author to whom correspondence should be addressed.
Genes 2021, 12(2), 228; https://doi.org/10.3390/genes12020228
Submission received: 18 December 2020 / Revised: 23 January 2021 / Accepted: 1 February 2021 / Published: 4 February 2021
(This article belongs to the Section Plant Genetics and Genomics)
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Abstract
The regulation of cannabinoid synthesis in Cannabis sativa is of increasing research interest as restrictions around the globe loosen to allow the plant’s legal cultivation. Of the major cannabinoids, the regulation of cannabigerolic acid (CBGA) production is the least understood. The purpose of this study was to elucidate the inheritance of CBGA dominance in C. sativa and describe a marker related to this chemotype. We produced two crossing populations, one between a CBGA dominant cultivar and a tetrahydrocannabinolic acid (THCA) dominant cultivar, and one between a CBGA dominant cultivar and a cannabidiolic acid (CBDA) cultivar. Chemical and genotyping analyses confirmed that CBGA dominance is inherited as a single recessive gene, potentially governed by a non-functioning allelic variant of the THCA synthase. The “null” THCAS synthase contains a single nucleotide polymorphism (SNP) that may render the synthase unable to convert CBGA to THCA leading to the accumulation of CBGA. This SNP can be reliably used as a molecular marker for CBGA dominance in the selection and breeding of C. sativa.Keywords:
cannabinoids; cannabinoid synthesis; CBG; hemp
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The X and Y chromosomes were found to be submetacentric and subtelocentric, respectively.
submetacentric. 1 of 2 adjective. sub·meta·cen·tric ˌsəb-ˌmet-ə-ˈsen-trik. : having the centromere situated so that one chromosome arm is somewhat shorter than the other.
subtelocentric
X Y
submetacentric. 1 of 2 adjective. sub·meta·cen·tric ˌsəb-ˌmet-ə-ˈsen-trik. : having the centromere situated so that one chromosome arm is somewhat shorter than the other.
subtelocentric
A chromosome whose centromere lies between its middle and its end but closer to the end. |
X Y
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From the examination of five QTLs, Faux et al. discovered a sex-locus region on the X chromosome suggesting that sex-determining traits are on the X chromosome in monoecious cannabis [20].
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https://en.wikipedia.org/wiki/Dioecy#Evolution_of_dioecy
Evolution of dioecy
[edit]For evolution in animals, see Gonochorism § Evolution.
In plants, dioecy has evolved independently multiple times[26] either from hermaphroditic species or from monoecious species. A previously untested hypothesis is that this reduces inbreeding;[27] dioecy has been shown to be associated with increased genetic diversity and greater protection against deleterious mutations.[28] Regardless of the evolutionary pathway the intermediate states need to have fitness advantages compared to cosexual flowers in order to survive.[29]
Dioecy evolves due to male or female sterility,[30] although it is unlikely that mutations for male and female sterility occurred at the same time.[31] In angiosperms unisexual flowers evolve from bisexual ones.[32] Dioecy occurs in almost half of plant families, but only in a minority of genera, suggesting recent evolution.[33] For 160 families that have dioecious species, dioecy is thought to have evolved more than 100 times.[34]
In the family Caricaceae, dioecy is likely the ancestral sexual system.[35]
From monoecy
[edit]Dioecious flowering plants can evolve from monoecious ancestors that have flowers containing both functional stamens and functional carpels.[36] Some authors argue monoecy and dioecy are related.[37]
In the genus Sagittaria, since there is a distribution of sexual systems, it has been postulated that dioecy evolved from monoecy[38] through gynodioecy mainly from mutations that resulted in male sterility.[39]: 478 However, since the ancestral state is unclear, more work is needed to clarify the evolution of dioecy via monoecy.[39]: 478
From hermaphroditism
[edit]Dioecy usually evolves from hermaphroditism through gynodioecy but may also evolve through androdioecy,[40] through distyly[41] or through heterostyly.[28] In the Asteraceae, dioecy may have evolved independently from hermaphroditism at least 5 or 9 times. The reverse transition, from dioecy back to hermaphroditism has also been observed, both in Asteraceae and in bryophytes, with a frequency about half of that for the forward transition.[42]
In Silene, since there is no monoecy, it is suggested that dioecy evolved through gynodioecy.[43]
Speciation - Wikipedia
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https://doi.org/10.1186/s42238-019-0001-1
Genetic tools weed out misconceptions of strain reliability in Cannabis sativa:
implications for a budding industry
https://jcannabisresearch.biomedcentral.com/counter/pdf/10.1186/s42238-019-0001-1.pdf
Pheno hybrid differences from S1 seeds or clones ?
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question for sam the skunkman on the original haze- Latest: RingtailCanyon
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