I haven't had a successful grow in almost three years now. I have little doubt that it is fusarium, though I never took samples to be lab tested.
One of the first things to go was my cloning. For a number of years my home built spray cloners popped out happy rooted cuttings like clockwork. Then the root production started faltering and unrooted stems began succumbing to something that turned them to a soft brown mush. I'd lift the cloner lid, and while watching underneath give it a gentle shake. Afflicted stems would wriggle like soft noodles. Above the cloner lid, plants first showed distress by a yellow-browning and softening of the youngest leaflets. Some where in this time a few mature flowering plants showed the sudden symptoms of wilting bleached tops... and death.
The adult infections didn't increase for a long while but cloning became nearly impossible. I'd bleach cloners, and run them with bleach in the water. Tried earthworm castings in the water. Mycorrhiza (Great White) on the stems gave me some beautiful lush white roots a few times. Bubble cloners didn't go. Cleaned with Oxidate and Physan. A little success with individual cups of perlite, but it was not enough. The infection now decimated several crops near harvest. A brand new cloner got the last batch of rooted cuttings, from plants from seeds, but then no more.
I had gotten really meticulous with my sterile cloning technique, but still lost most all. Then I had a run of plants from seed and had been keeping a group of males in their beer cups on the veg table while their sisters were put into larger pots in another room. The root bound males were getting along, when I thought they might be showing a slight distress, a slight mottled interveinal chlorosis. But they seemed to be doing OK, and I shrugged it off. Then I took cuttings from everybody and into the cloner. A week later I lifted the lid and gave it a shake. All those male cuttings did the pale brown noodle shake. It was then I realized that infected plants were bringing the pathogen into the cloner. It didn't matter how sterile my razor blade was when the cutting's vascular tissue already contained the pathogen.
It makes total sense. A water borne root infecting fungus that enters the plant and travels up the vascular tissue. It's going to be in some of your cuttings. Maybe not all. Many articles mention fusarium sometimes only killing certain branches of a plant. Think of that old grade school demo of slitting a celery stem halfway and placing the two separated ends in glasses of different colored solution, giving you a bi-colored leafy celery top.
This disease doesn't fully manifest itself until after a plant is well into flowering. So it may not obviously manifest itself in a veg state mother. And you mention soil with beneficials. I was growing in coco coir in flood trays (perfect for infection) using Maxibloom salts.
My plants showed poor root development, but never showed the swelling or discoloration of the stem base described in many articles. The infected stems of cuttings became soft, brownish and mushy, but they weren't covered with a slime or anything. It was the plant tissue which was soft. I could test stems by rubbing them with the edge of a toothpick. With healthy stems the toothpick bounced along a firm green stem. When infected it was like a push-broom moving an inch of wet snow on a concrete slab.
The farm has a interesting fusarium thread, "Welcome to the Fungal,..."