I would like to start this discussion by presenting this paper that concludes in part by saying that in a selfing scheme "Recessive alleles are more efficiently purged in self-fertilizing than in outcrossing populations and contribute less to polymorphism."
Genetics. 2007 Oct; 177(2): 905–916.
doi: 10.1534/genetics.107.073601
Mating Systems and the Efficacy of Selection at the Molecular Level
Sylvain Glémin
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2034653/
Yet another reason to ditch the Y?
Genetics. 2007 Oct; 177(2): 905–916.
doi: 10.1534/genetics.107.073601
Mating Systems and the Efficacy of Selection at the Molecular Level
Sylvain Glémin
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2034653/
Yet another reason to ditch the Y?