Pythium Root Rot in Soil and Hydroponic Applications
As any professional grower or gardener will tell you, Pythium root rot is a nasty pest that, if left untreated, can cause failure of an entire crop in very short order. Formerly classified as a fungus, scientists have learned much more about the varying “strains” of Pythium and have changed its classification to a pathogen. Regardless of the type of pathogen involved, the mechanism of action for the Pythium genus remains the same. Oftentimes Pythium root rot is referred to as “damping off.”
I. General Background
As any professional grower or gardener will tell you, Pythium root rot is a nasty pest that, if left untreated, can cause failure of an entire crop in very short order. Formerly classified as a fungus, scientists have learned much more about the varying “strains” of Pythium and have changed its classification to a pathogen. Regardless of the type of pathogen involved, the mechanism of action for the Pythium genus remains the same. Oftentimes Pythium root rot is referred to as “damping off.”
These pathogens directly attack the root system of the plant, causing normally healthy white roots to change color to brown or gray. This typically happens within just a few days of the initial infection of the system. This is followed by a “sliming off” of the roots. (The general texture of healthy roots is somewhat rigid, with “fishbone” style feeder roots emanating from a centrally located tap root.) Rather than feeling rigid and appearing white, they develop the appearance and feel of mush, oftentimes falling off to be circulated in the system. This presents multiple problems, the most obvious of which leaves a plant attempting to grow with no root system to provide sustenance. This infected root mass that is circulating through the system will in fact contaminate the other plants that reside in that system.
There is no doubt that Pythium is much more devastating in a hydroponic application when compared to a soil application. This is due in large part to the fact that Pythium has adapted very well to live in water. Certain varieties of Pythium will produce what are known as zoospores (small, flagellated spores) that are extremely small, motile spores able to move in water. These spores are able to move from plant to plant via the water in the system, colonizing and infecting along the way. They even have the ability to remain viable for long periods of time in soil and in the nooks and crannies of a hydroponic system.
That is not to say that soil/container gardeners should leave Pythium untreated. Regardless of media, the pathogen will eventually find its way to the root system and begin to wreak havoc. But soil gardeners get a distinct advantage in the fight vs. Pythium. The root system of the plant (along with any mycorrhizal networks present) creates a web-like barrier that can slow down the spread the Pythium. The symbiotic relationship between the mycorrhizal fungi and the roots of the plant not only provide enhanced access to carbohydrates, water, and minerals, but also provide additional benefits such as increased resistance to diseases and drought.
Now there are a few important things to note before we begin talking about treatment and prevention. Being that Pythium has the ability to remain behind in a media, while remaining viable, certain preventative measure simply will not work. Typically, large scale farmers will rotate crops and leave some fields unused for several seasons, a process known as fallowing. The central idea behind this technique is to avoid not only the buildup of pathogens and pests, but also to avoid over depletion of the nutrients in the soil. However, due to the hardiness of Pythium and its ability to feed on any dead organic matter, crop rotation is just not a viable preventative measure for treatment. It’s important to focus on the last part of that statement, “Pythium has a unique ability that allows it to consume dead organic matter.” That includes dead leaves and roots, along with a multitude of other food sources.
II. Causes and Tips on General Preventative Techniques
We understand that the ultimate cause of root rot or “damping off” is by a pathogen. But pathogens don’t just magically appear in our growing environments, they are brought in. Now that implies that they have a suitable environment with which to grow, feed, and ultimately destroy our crops. Unfortunately for us (the growers) the environment in which Pythium thrives happens to be nearly identical to the one that our plants and crops find most enjoyable too. So how can we make the environment as uninhabitable as possible for Pythium, without harming our plants in the process?
Keeping the system clean is just part of it; we also need to make sure the water is clean too. Water that contains any amount of chlorine (nearly all tap water in the U.S. is treated with it to reduce and prevent diseases) will typically be free of most of the harmful pathogens. Growers that use rainwater, run-off water, or even well-water are at a higher risk for having contaminated water. (Simply due to the fact that we have no idea what environments that water has passed through prior to arriving at its destination.)
The inclusion of an enzyme product in your feeding regimen is also an excellent way to prevent the buildup of dead organic matter. This robs any pathogen of a potentially rich food source, which also helps to keep the water clean. Hygrozyme, when used at maintenance doses of 5mL-10mL does a fantastic job of keeping that organic waste from becoming a home to an annoying pest.
Keeping the media over-saturated or improperly oxygenated can also lead to Pythium problems. Too much water will not allow sufficient oxygen into the media, creating an anaerobic environment. This leads to rotting material, and subsequently an excellent place for Pythium to take hold. The addition of air stones to any hydroponic environment is a must, this keeps the nutrient solution richly oxygenated, further preventing any material from rotting. Since air stones are useless in soil, I prefer to add lots and lots of perlite to my soil mixes, this loosens the soil up and makes it drain and breathe easier. Allowing oxygen to the media is an important step in preventing any possible root zone problems.
Water temperature is another important factor in preventing Pythium. The ideal water temperature in a hydroponic environment is 68-70 degrees F. Just some numbers here to put things in perspective a bit: at 50 degrees F, the amount of dissolved oxygen in water is approximately 11.5 mg/l, at 70 F it’s 9 mg/l, and at 90 F it’s 7.5 mg/l. Remember, this is the maximum amount of oxygen that water can hold at a given temperature, nothing we do (aside from changing the temperature) can change that. It’s worth noting that impurities such as salt or heavy metals will cause the saturation levels to decrease even more. So in a hydroponic environment, with nutrients in the reservoir, the amount of dissolved oxygen could be significantly less. Not only are we hurting our plants by providing insufficient oxygen, but we are also providing a more welcoming home for pathogens.
III. Prevention and Treatment
So, how do we effectively eliminate Pythium from our gardens, and how do we keep it from coming back? First and foremost, and I cannot stress this enough as it is one of the most overlooked means of prevention, Cleanliness, Cleanliness, Cleanliness. I have compiled a list of the Top 10 ways to maintain a clean grown environment, and they’re in no particular order.
1. Remove dead matter (including leaves) from the plants, floors, walls, and wherever else they may get stuck. Be sure to move the dead, soiled material to a trash basin that is located outside the grow space. A better method is to destroy the dead matter all together, thereby eliminating the chance of re-infection by dead matter.
2. Do not move plants from soil into a hydroponic system. Inevitably some of the soil will remain attached to the root systems, and will provide a nice organic food source for any lingering pathogens.
3. Change into clean clothes prior to entering the grow area. There is a plethora of little pests that would like nothing better than to hitch a ride on your clothes or shoes into a nice comfortable grow environment.
4. Clean and sterilize all system components between crops. This includes all net pots, buckets, feed and drain lines, pumps, trays, reservoirs, lids, basically anything used to house the plants or the water that feeds them. Don’t forget to also clean the walls, floor, and ceiling just to eliminate any possibilities.
5. Keep your nutrient tanks clean!! This should be a given, but I’ve seen and I know many people that only clean the tanks between crops. Personally I rinse and clean my reservoirs every two weeks, and I change the nutrient solution every week. Organic nutrient users will have a large amount of organic matter on the bottom of their tanks, while chemical nutrient users will typically have a salt buildup.
6. Avoid at all costs allowing plant material to fall into the reservoirs or grow chambers. Again, this material will begin to decompose, providing another food source for the pathogens.
7. Clean, sterilize, and disinfect all tools and equipment used during the growing cycle, including TDS and PH testers, and gardening tools (trowels, hoses, etc), hoods, blowers, workbench, etc. Remember to dispose of properly any contaminated cleaning supplies (towels, rags, etc.)
8. Keep all tanks, reservoirs, and grow chambers properly covered. This not only prevents light from getting in (crucial to keeping algae growth at a minimum) but also prevents any unwanted matter from falling into the system.
9. Do not bring outdoor plants into your indoor growing environment. Outdoor plants are exposed to many more pathogens than indoor plants are, and bringing them in poses a serious contamination risk.
10. After handling potentially infected material, be sure to wash your hands and any other part of your body that may have come in contact with the material. When dealing with potential pathogens or pests I prefer to wear disposable gloves so that when I’m done, I pitch the gloves and avoid getting any contaminants on me.
So you followed nearly everything on that list and you still got root rot, now what?
Treatment methods will vary depending on the severity of the infection, but there are some methods that are generally considered acceptable. First and foremost, if you decide to use chemicals to treat root rot, make sure they do not leave behind any residues. Some chemicals can leave behind residues that will not break down easily, and can cause serious problems with plants.
Most preventative measures will include the use of an enzyme product (such as Hygrozyme) to facilitate the breakdown of dead matter. Hygrozyme, used at 10mL-15mL per gallon will ensure that any dead organic matter that finds its way into the growing systems will be consumed and converted into a usable mineral matrix for your plants. Hygrozyme works great for this purpose and has the added benefit of being a bacteria free enzyme concentrate. When trying to remove a pathogen I don’t see much point in adding new bacteria into the system. (Yes, some enzyme concentrates DO contain bacteria in addition to the enzymes.) Hygrozyme is also great to use to clean your equipment mid-cycle. It has no toxic ingredients, leaves behind no residues, is OMRI certified and is completely safe for any types of plants whether in soil or hydroponics.
There are fungicides available commercially that will work to suppress and control Pythium, look for products containing the Trichoderma genus of fungi. There is some evidence that the Bacillus subtilis can also play a role in preventing and controlling certain root zone problems. (Hydroguard is a commercially available biological water treatment containing B. subtilis.) Again, these fungicides are at their best when used in an overall preventative capacity.
The fact of the matter is that Pythium can be a real bear to get rid of, especially if we desire to save the plants that are infected. Any failure to rid the system completely of Pythium will just result in the new roots that our plants grow to succumb to the same infection that got the previous ones. Only through proper preventative measures including a clean grow environment, Hygrozyme or a similar product to ensure no dead matter is present in the reservoir, proper sterilization between cycles, and a careful eye can we ensure that our plants remain as healthy and as vigorous as possible
this might work it seems interesting thought i have not tried it yet, hope i dont need to, lol http://controlpythium.info/
As any professional grower or gardener will tell you, Pythium root rot is a nasty pest that, if left untreated, can cause failure of an entire crop in very short order. Formerly classified as a fungus, scientists have learned much more about the varying “strains” of Pythium and have changed its classification to a pathogen. Regardless of the type of pathogen involved, the mechanism of action for the Pythium genus remains the same. Oftentimes Pythium root rot is referred to as “damping off.”
I. General Background
As any professional grower or gardener will tell you, Pythium root rot is a nasty pest that, if left untreated, can cause failure of an entire crop in very short order. Formerly classified as a fungus, scientists have learned much more about the varying “strains” of Pythium and have changed its classification to a pathogen. Regardless of the type of pathogen involved, the mechanism of action for the Pythium genus remains the same. Oftentimes Pythium root rot is referred to as “damping off.”
These pathogens directly attack the root system of the plant, causing normally healthy white roots to change color to brown or gray. This typically happens within just a few days of the initial infection of the system. This is followed by a “sliming off” of the roots. (The general texture of healthy roots is somewhat rigid, with “fishbone” style feeder roots emanating from a centrally located tap root.) Rather than feeling rigid and appearing white, they develop the appearance and feel of mush, oftentimes falling off to be circulated in the system. This presents multiple problems, the most obvious of which leaves a plant attempting to grow with no root system to provide sustenance. This infected root mass that is circulating through the system will in fact contaminate the other plants that reside in that system.
There is no doubt that Pythium is much more devastating in a hydroponic application when compared to a soil application. This is due in large part to the fact that Pythium has adapted very well to live in water. Certain varieties of Pythium will produce what are known as zoospores (small, flagellated spores) that are extremely small, motile spores able to move in water. These spores are able to move from plant to plant via the water in the system, colonizing and infecting along the way. They even have the ability to remain viable for long periods of time in soil and in the nooks and crannies of a hydroponic system.
That is not to say that soil/container gardeners should leave Pythium untreated. Regardless of media, the pathogen will eventually find its way to the root system and begin to wreak havoc. But soil gardeners get a distinct advantage in the fight vs. Pythium. The root system of the plant (along with any mycorrhizal networks present) creates a web-like barrier that can slow down the spread the Pythium. The symbiotic relationship between the mycorrhizal fungi and the roots of the plant not only provide enhanced access to carbohydrates, water, and minerals, but also provide additional benefits such as increased resistance to diseases and drought.
Now there are a few important things to note before we begin talking about treatment and prevention. Being that Pythium has the ability to remain behind in a media, while remaining viable, certain preventative measure simply will not work. Typically, large scale farmers will rotate crops and leave some fields unused for several seasons, a process known as fallowing. The central idea behind this technique is to avoid not only the buildup of pathogens and pests, but also to avoid over depletion of the nutrients in the soil. However, due to the hardiness of Pythium and its ability to feed on any dead organic matter, crop rotation is just not a viable preventative measure for treatment. It’s important to focus on the last part of that statement, “Pythium has a unique ability that allows it to consume dead organic matter.” That includes dead leaves and roots, along with a multitude of other food sources.
II. Causes and Tips on General Preventative Techniques
We understand that the ultimate cause of root rot or “damping off” is by a pathogen. But pathogens don’t just magically appear in our growing environments, they are brought in. Now that implies that they have a suitable environment with which to grow, feed, and ultimately destroy our crops. Unfortunately for us (the growers) the environment in which Pythium thrives happens to be nearly identical to the one that our plants and crops find most enjoyable too. So how can we make the environment as uninhabitable as possible for Pythium, without harming our plants in the process?
Keeping the system clean is just part of it; we also need to make sure the water is clean too. Water that contains any amount of chlorine (nearly all tap water in the U.S. is treated with it to reduce and prevent diseases) will typically be free of most of the harmful pathogens. Growers that use rainwater, run-off water, or even well-water are at a higher risk for having contaminated water. (Simply due to the fact that we have no idea what environments that water has passed through prior to arriving at its destination.)
The inclusion of an enzyme product in your feeding regimen is also an excellent way to prevent the buildup of dead organic matter. This robs any pathogen of a potentially rich food source, which also helps to keep the water clean. Hygrozyme, when used at maintenance doses of 5mL-10mL does a fantastic job of keeping that organic waste from becoming a home to an annoying pest.
Keeping the media over-saturated or improperly oxygenated can also lead to Pythium problems. Too much water will not allow sufficient oxygen into the media, creating an anaerobic environment. This leads to rotting material, and subsequently an excellent place for Pythium to take hold. The addition of air stones to any hydroponic environment is a must, this keeps the nutrient solution richly oxygenated, further preventing any material from rotting. Since air stones are useless in soil, I prefer to add lots and lots of perlite to my soil mixes, this loosens the soil up and makes it drain and breathe easier. Allowing oxygen to the media is an important step in preventing any possible root zone problems.
Water temperature is another important factor in preventing Pythium. The ideal water temperature in a hydroponic environment is 68-70 degrees F. Just some numbers here to put things in perspective a bit: at 50 degrees F, the amount of dissolved oxygen in water is approximately 11.5 mg/l, at 70 F it’s 9 mg/l, and at 90 F it’s 7.5 mg/l. Remember, this is the maximum amount of oxygen that water can hold at a given temperature, nothing we do (aside from changing the temperature) can change that. It’s worth noting that impurities such as salt or heavy metals will cause the saturation levels to decrease even more. So in a hydroponic environment, with nutrients in the reservoir, the amount of dissolved oxygen could be significantly less. Not only are we hurting our plants by providing insufficient oxygen, but we are also providing a more welcoming home for pathogens.
III. Prevention and Treatment
So, how do we effectively eliminate Pythium from our gardens, and how do we keep it from coming back? First and foremost, and I cannot stress this enough as it is one of the most overlooked means of prevention, Cleanliness, Cleanliness, Cleanliness. I have compiled a list of the Top 10 ways to maintain a clean grown environment, and they’re in no particular order.
1. Remove dead matter (including leaves) from the plants, floors, walls, and wherever else they may get stuck. Be sure to move the dead, soiled material to a trash basin that is located outside the grow space. A better method is to destroy the dead matter all together, thereby eliminating the chance of re-infection by dead matter.
2. Do not move plants from soil into a hydroponic system. Inevitably some of the soil will remain attached to the root systems, and will provide a nice organic food source for any lingering pathogens.
3. Change into clean clothes prior to entering the grow area. There is a plethora of little pests that would like nothing better than to hitch a ride on your clothes or shoes into a nice comfortable grow environment.
4. Clean and sterilize all system components between crops. This includes all net pots, buckets, feed and drain lines, pumps, trays, reservoirs, lids, basically anything used to house the plants or the water that feeds them. Don’t forget to also clean the walls, floor, and ceiling just to eliminate any possibilities.
5. Keep your nutrient tanks clean!! This should be a given, but I’ve seen and I know many people that only clean the tanks between crops. Personally I rinse and clean my reservoirs every two weeks, and I change the nutrient solution every week. Organic nutrient users will have a large amount of organic matter on the bottom of their tanks, while chemical nutrient users will typically have a salt buildup.
6. Avoid at all costs allowing plant material to fall into the reservoirs or grow chambers. Again, this material will begin to decompose, providing another food source for the pathogens.
7. Clean, sterilize, and disinfect all tools and equipment used during the growing cycle, including TDS and PH testers, and gardening tools (trowels, hoses, etc), hoods, blowers, workbench, etc. Remember to dispose of properly any contaminated cleaning supplies (towels, rags, etc.)
8. Keep all tanks, reservoirs, and grow chambers properly covered. This not only prevents light from getting in (crucial to keeping algae growth at a minimum) but also prevents any unwanted matter from falling into the system.
9. Do not bring outdoor plants into your indoor growing environment. Outdoor plants are exposed to many more pathogens than indoor plants are, and bringing them in poses a serious contamination risk.
10. After handling potentially infected material, be sure to wash your hands and any other part of your body that may have come in contact with the material. When dealing with potential pathogens or pests I prefer to wear disposable gloves so that when I’m done, I pitch the gloves and avoid getting any contaminants on me.
So you followed nearly everything on that list and you still got root rot, now what?
Treatment methods will vary depending on the severity of the infection, but there are some methods that are generally considered acceptable. First and foremost, if you decide to use chemicals to treat root rot, make sure they do not leave behind any residues. Some chemicals can leave behind residues that will not break down easily, and can cause serious problems with plants.
Most preventative measures will include the use of an enzyme product (such as Hygrozyme) to facilitate the breakdown of dead matter. Hygrozyme, used at 10mL-15mL per gallon will ensure that any dead organic matter that finds its way into the growing systems will be consumed and converted into a usable mineral matrix for your plants. Hygrozyme works great for this purpose and has the added benefit of being a bacteria free enzyme concentrate. When trying to remove a pathogen I don’t see much point in adding new bacteria into the system. (Yes, some enzyme concentrates DO contain bacteria in addition to the enzymes.) Hygrozyme is also great to use to clean your equipment mid-cycle. It has no toxic ingredients, leaves behind no residues, is OMRI certified and is completely safe for any types of plants whether in soil or hydroponics.
There are fungicides available commercially that will work to suppress and control Pythium, look for products containing the Trichoderma genus of fungi. There is some evidence that the Bacillus subtilis can also play a role in preventing and controlling certain root zone problems. (Hydroguard is a commercially available biological water treatment containing B. subtilis.) Again, these fungicides are at their best when used in an overall preventative capacity.
The fact of the matter is that Pythium can be a real bear to get rid of, especially if we desire to save the plants that are infected. Any failure to rid the system completely of Pythium will just result in the new roots that our plants grow to succumb to the same infection that got the previous ones. Only through proper preventative measures including a clean grow environment, Hygrozyme or a similar product to ensure no dead matter is present in the reservoir, proper sterilization between cycles, and a careful eye can we ensure that our plants remain as healthy and as vigorous as possible
this might work it seems interesting thought i have not tried it yet, hope i dont need to, lol http://controlpythium.info/
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